Array 1 284634-285381 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXDE01000019.1 Moraxella catarrhalis strain 2041717D 2041717D_NODE_2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    284634	    28	 100.0	    32	............................	CACATAAAGTACTGCTTAGCGTTCTTGAAAAA	
    284694	    28	 100.0	    32	............................	ATAACGCACCTTCCATATCAAAACCTAAATCA	
    284754	    28	 100.0	    32	............................	ACAGGGAGATTATCGCAAAAATACAGCCAAAT	
    284814	    28	 100.0	    32	............................	AATATAAGTTATCATCAACTGTGTGTAGCTTT	
    284874	    28	 100.0	    32	............................	ATCAACGCCAAGCTGGCGGACGGTGTTGATGT	
    284934	    28	 100.0	    32	............................	AGACTGCCCTAGGATGAATGCACCTATTGCCA	
    284994	    28	 100.0	    32	............................	ACTCACTACAAAAATACTTCGCTTTATGCTGT	
    285054	    28	 100.0	    32	............................	TCTCCAGTTGGCAACGAAAATCCATTTTTCTC	
    285114	    28	 100.0	    32	............................	GCAATGAAACACGCACGCTGACAGACGCTAAC	
    285174	    28	 100.0	    32	............................	ATGCCTGACACCACACCGCCTGACTGCACTTT	
    285234	    28	  96.4	    32	..........A.................	TAGCACCGCCCAGCCGCCCACACACGCACATT	
    285294	    28	 100.0	    32	............................	AAGCGATTAATCCGCTCACCAATTGTTCTGTT	
    285354	    28	  96.4	     0	..........A.................	|                               	
==========	======	======	======	============================	================================	==================
        13	    28	  99.4	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [9,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//