Array 1 166622-164958 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVU01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-013 NODE_2_length_617544_cov_43.8691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166621 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 166560 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 166499 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 166438 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 166371 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 166310 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 166249 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 166188 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 166127 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166066 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166005 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165944 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165883 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165822 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165761 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 165700 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165639 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165578 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165517 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165414 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165353 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165292 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165231 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165170 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165109 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165048 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164987 29 96.6 0 A............................ | A [164960] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184005-182879 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVU01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-013 NODE_2_length_617544_cov_43.8691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184004 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183943 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183882 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183821 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183760 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183699 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183638 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183577 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183516 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183455 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183394 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183333 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183272 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183211 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183150 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 183089 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 183028 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182967 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182906 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //