Array 1 61877-62571 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POPT01000063.1 Streptococcus suis strain 183 SS_0183_Contig63, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     61877	    32	 100.0	    36	................................	TTGTCAGCCTTCTACCTCGATTTTGCCAAAGATGTC	
     61945	    32	 100.0	    34	................................	TTGACCGGTAAGAGCTCGGAAACGACGGAAAAGG  	
     62011	    32	 100.0	    33	................................	TTCTTTGTTTGCTAATTCAACTGCATATTCCAA   	
     62076	    32	 100.0	    33	................................	ATTTATATGTCCACATCTCAGCGGATGAGATTA   	
     62141	    32	 100.0	    33	................................	CAACTACATCTACTTGGTTTGTTGAAATGACGT   	
     62206	    32	 100.0	    35	................................	TTCCCGGCACGCTAAACATCGGCGGGAGTGCCTTT 	
     62273	    32	 100.0	    36	................................	ATTTTTCCATTTATAGTTGGGTACCTCATCCAAAAA	
     62341	    32	 100.0	    34	................................	GATTTGAGCTTTTGAAAGTCATCTTGACCATAAA  	
     62407	    32	 100.0	    36	................................	CCCTCGAAGAATGTTTATACGTCTCAGAAGCAACTC	
     62475	    32	 100.0	    33	................................	AGGGCATTGAGCTGTTCTTGGGTCAATGCTTGG   	
     62540	    32	  71.9	     0	.......T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        11	    32	  97.4	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGACAGTTATCCTCCCTTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAATAAAGAATAAGTTGCTGGAAATCATTGATAAGGAACAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACAAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATAAAATGCGAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGATATATTCCATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATAACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAGTATGTGGACCTGACGGTAGATGGGGCTGACGAGGTGGATGGTGCCTTCAATGGTATAAAGGGTGGCGGTGCTGCACTGCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 9.13
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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