Array 1 38-1592 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXI01000065.1 Escherichia coli strain IH28c NODE_65_length_25811_cov_21.484192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38 29 96.6 32 ............................A ATACCCAGCGCAATTTCGAGCGCGAGAGAGTT 99 29 100.0 32 ............................. CCCCAGCGCGCTAAGAACTTCGTAAATATTGA 160 29 100.0 32 ............................. CCGGCGAAGTCTTTCCCTCTGTCATCGTGTTG 221 29 100.0 32 ............................. CTTTTCCGAGCTCACGAGTTACCGGCTATCGC 282 29 100.0 32 ............................. TTGACCCATGCGCTAAGGTCAAAATGACCCAA 343 29 100.0 32 ............................. CACTGTTATTCAGAGGGGTAAATAAAAAATAT 404 29 100.0 32 ............................. ATTTGCTCGCGATGCGCCTGCAGCTGGAACCC 465 29 100.0 32 ............................. GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT 526 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 588 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 649 29 100.0 32 ............................. TCAGCGTAATATCACCCGTCAGCGCCTTATTA 710 29 100.0 32 ............................. TCGAGCTGCTGGCGCAGGACGTCGCAATTTAC 771 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 832 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 893 29 96.6 32 .................A........... CCTTGATCGGATTCCAGAAACGAACCACTAAA 954 29 100.0 32 ............................. CCGCACCCCGCGCGGTTGGTCTGGATGACAGT 1015 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 1076 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 1137 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 1198 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 1259 29 96.6 32 .......T..................... GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 1320 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 1381 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 1442 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 1503 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 1564 28 72.4 0 .AA........C..T....A..-.C...C | T [1583] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGTG # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77931-78691 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSXI01000014.1 Escherichia coli strain IH28c NODE_14_length_78949_cov_22.575525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77931 29 100.0 32 ............................. GCTAATTTACGTAATTTACGTGCTATTGCACT 77992 29 100.0 32 ............................. CCTCTGGTTTAAAAAAGCCGCCGTCAGCGAGC 78053 29 100.0 32 ............................. ACGCAGAATCACGACGCGGTAGAGCGTTACGT 78114 29 100.0 32 ............................. ACCCCGGCAGTGTCTGTTTGACTAATTTATGC 78175 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 78236 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 78297 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 78358 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 78419 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 78480 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 78541 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 78602 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 78663 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAACATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCCGGAATGCATTCTGAAGGTTTGCTGTGGAAGGTGCGAATAAGCAGGTCATTTCTTCCCAAGCTGACTCGCTGATTAAAATTTCGCGGATCTGGGCCGATTTTTTTCCCGCAAACAATCGAATCAGCCTATTTAGGCTATTTTTTCCACCATTTCTGGCGTTATTTCCGGTTTTTACTGAGATCTCTCCCACTGACGTATCATTTGGTCCACCCGAAACAGGTTGGCCAGGGTGAATAACATCGCCAGTTGGTTATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //