Array 1 221748-222937 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MYWJ01000003.1 Salmonella enterica strain BCW_6265 NODE_3_length_431330_cov_2.45224, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    221748	    29	 100.0	    32	.............................	TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 	
    221809	    29	 100.0	    32	.............................	GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 	
    221870	    29	 100.0	    32	.............................	GATGCTAACCACTATTTCATCCGCCTCGACGA 	
    221931	    29	 100.0	    32	.............................	GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 	
    221992	    29	 100.0	    32	.............................	CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 	
    222053	    29	 100.0	    32	.............................	CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 	
    222114	    29	 100.0	    32	.............................	ATTGATCCAATTAACGTAGCTGCAATGTTTGT 	
    222175	    29	 100.0	    32	.............................	GCCGCGCATGACATCGAAAAAATGTGGGAAAA 	
    222236	    29	 100.0	    32	.............................	GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 	
    222297	    29	 100.0	    32	.............................	TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 	
    222358	    29	 100.0	    32	.............................	TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 	
    222419	    29	 100.0	    32	.............................	CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 	
    222480	    29	 100.0	    33	.............................	GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC	
    222542	    29	 100.0	    32	.............................	ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 	
    222603	    29	 100.0	    32	.............................	TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 	
    222664	    29	 100.0	    32	.............................	TTACTGAAACGGATAAAAAATAATCAGGGGGG 	
    222725	    29	 100.0	    32	.............................	GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 	
    222786	    29	 100.0	    32	.............................	CGCAACTATCCATGCAAATATTTCCATTGCTA 	
    222847	    29	 100.0	    32	.............................	GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 	
    222908	    29	  96.6	     0	............T................	|                                	A [222935]
==========	======	======	======	=============================	=================================	==================
        20	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//