Array 1 191999-191236 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYZ01000011.1 Skermanella aerolata strain NBRC 106429 sequence011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 191998 36 94.4 30 ........C..C........................ GGGGCCGTCCATAACGCGCAACTCTTGAGA 191932 36 100.0 30 .................................... GCCTTCACCGCCCGAACAAGGCCGAACCGC 191866 36 100.0 30 .................................... TTATGGGTGATGCAGTAGTCTTTGCGGTCA 191800 36 100.0 30 .................................... CGAACGTTACCCTGACCGCCTGTAACCTGT 191734 36 100.0 31 .................................... CCTCATCACCGTACATACCCTCAGTAGTGCA 191667 36 100.0 30 .................................... GCGGTTCAGCATGGTCTTGACGGTACCGTA 191601 36 100.0 30 .................................... CCATGCAAACCAACCTCACCATCCTAAGCG 191535 36 100.0 30 .................................... CACACCCAAGCGCGGCCGAGATCCTGACCG 191469 36 100.0 30 .................................... TGGTGCCGTTGGCGATGTAGTCGCCGAAGA 191403 36 100.0 30 .................................... GTCCGACCAGAGATACGCACAGGAGATCGA 191337 36 100.0 30 .................................... CTTTCGTTCGCGCGGCGTAGGTCGAGATCA 191271 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.5 30 GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Left flank : GCGAGATCGTCGACATGGGCGCCTGGACCGGCTCCGCCCGGAACCTGCGCGTCCCCATGGCCCCCGCCGGCTACGGCGTCGCCGTCCTGGTCCAGGAGTTCGACGCCGAGGGCCGCCCTGGGGCCATCCTGGGAGCGGCGCGGGTCGAACGCCGCCTGCTGGGCGCCGGCGTCACCCCCTGGGAAGCCCTGGTGAGGACGATGCGCGCGGCGGCCCGCCGGATGACCGGCGGCGACGGCGGTGCTGCGCCGCTGTAACCCCGAACGGGAGGGAACCGCCGCTTCTACGGCGCCGCCGCGAGCATCGCCTGGAAGACGGCGCGGACCCGGTCCGCCCCGATGCCGGAAACCGCAATTCCGGCTTCCACCATCTCATCGGTCGGATCGGGTGGCACCACCACCAGCCCGGCCCTCCTGATGACGTCGAGCACGCCGAGAGCTTCCGTCATTACCGGAGAGCAGGCAAGGCAGTCCCCGTCCGGGACGACGTTCGACGCCCCA # Right flank : AGATCCCCGCATAAGCCTTTGATCCCAAAAGGCTTATGCGGCCTTTTTTCTCCAGTTCCCAACGACAAACCACCGTCAAAACAGCTTGAACTGCTCATATTTGGTTCCGGGTTCTCGTTTTGTCCGTGCCTCCAGGCACACCATCGTCTGATATTGGCGGTCGGTGAAGGTCAAGATCTGCACCTTGCCCTTGGCCGGCACCTGCCCTCTGATTCGCTTGATCCGCGCGTCCACCTGCGGGGAGCCGGCGCAAAAGCGCATATAGACGCTGAACTGCGACATTTCGAAGCCCTCGTCCAGCAGGAAGTTGCGAAATCCTGTCGCAGCCTTCCGCTCGGCCTTGGTGGATACGGGCAGGTCAAACATCACCATCATCCACATCAGCCGATACGCGCTGAGAGCCATGCGCGTCCTCCTTGCCGGTCGGTGAGACAACAAGATCCAGCGGCAGCGGCAACAGCGGCAGGTCAAGCACCTTGCGTTCGCCAAGCAGCAGTTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 53969-52109 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYZ01000038.1 Skermanella aerolata strain NBRC 106429 sequence038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53968 29 96.6 32 ............T................ TACGACCGCGCCCGCGATCTGTTCGCCCAGGT 53907 29 96.6 32 ..T.......................... TGGGATCAGGAAATCACTTCTGAGAGCTATTT 53846 29 96.6 32 ............................T CTCCCGTTCTGGCAGGATCTGTCCGGCCGCTC 53785 29 100.0 32 ............................. GTCGCGACCCTCAACAAGGTCATCCTGCCGGT 53724 29 100.0 32 ............................. TACCTGCGGTACCATCTTGAACTGCTGGCCAA 53663 29 100.0 32 ............................. GGCTGGTACGACTGGGAAATCATGTGCCCGGA 53602 29 100.0 32 ............................. GCCTTCAGCTTGTCGTCATACTCGCGCCGGTA 53541 29 100.0 32 ............................. GCTTTCATGATTGACTGATTGGCGCCAATCGA 53480 29 96.6 32 .............A............... GCCTCGGTGTTGACGATCCCGGCCGCGCTCGC 53419 29 93.1 32 .........A...A............... TTCCCGCAGACGCCGCAGGGCTTCCTGGCGTT 53358 29 96.6 32 .............A............... GGCGGCAACACCATCAATCTGCCGTTCTGGCA 53297 29 96.6 32 ...................A......... AACGAGCCTACCTACAAAGTGTGGATGCACAC 53236 29 96.6 32 ....T........................ TGGTGAATGGTACACCAGTCGCCGTCGATGGC 53175 29 96.6 32 .............A............... GGTACGGAATTCACGTTCGCGGGACTGCGCCA 53114 29 100.0 32 ............................. TCCTTGGGTTTGTTGGGGTGTGCGGCCCCATG 53053 29 89.7 33 ....T..GT.................... GGTATCTCGAGGCCGACGCCGATATGACGCACG 52991 29 100.0 32 ............................. CCGACTGGTGAGGCGAGGGATTGATCTCGGTG 52930 29 96.6 32 .................A........... CGGAGCGACTTGTCGATTTCGCCGGCAAGCCG 52869 29 100.0 32 ............................. TACCGCGAACTCTACACGCTGATCGAGCCCAA 52808 29 96.6 32 ................T............ TGCACGTTCTCGGGCAACTATCAGGGCTTCTA 52747 29 89.7 32 .............A.......G......G TCCGCTGTCATGTCGTTGGCGAGCTGCTGCGC 52686 29 96.6 32 .........................C... TTCCTTCAGCCGCCCTATGTGACGGTGGAGCG 52625 29 100.0 32 ............................. CCGTACACCGATACGGTCATGCGCAACACGCT 52564 29 96.6 32 ...........T................. TCGGCCATGACAGCCTGTCCGGGACCGCCTGC 52503 29 96.6 32 ............T................ GCGGAAATCGAAGGTAACGACGTGGTTGCGGA 52442 29 93.1 32 ............T............T... ATCGCAAAGCTGATCGCCGGCGCTACCGGCAT 52381 29 93.1 32 ..............C..........T... TCCCCGTAGTACAGAAGGACAACCTCAGAGCT 52320 29 100.0 32 ............................. TTGAACCAACCGCCGACGTAGTGAAGGCTGTT 52259 29 100.0 32 ............................. CAGCGCGTCGAAATGTTTTCGCCTTTCGTGGG 52198 29 100.0 32 ............................. CTGCCCGGTTGGGACGAACCAGAGGCGGCGAC 52137 29 89.7 0 .........A..............A...G | ========== ====== ====== ====== ============================= ================================= ================== 31 29 96.9 32 GGCTCCCCCGCGCCTGCGGGGATAGACCC # Left flank : ACAACCGATCTTTCAATCTGGTTGTTATGTCAAGCGAACCCCCACCCTCGTCTCCCAGTAGTATAGCCATTGCCGGACCGACATGACCCGCCCGCGGTACGGATTGCCGCCCGTCCCGGTCGAGCGCCTTGTTCTGGAACCCGTGATTGGCCTTGCCGAAATCATGCAGCCCCGCCAGCGCCGCCAAGCGTCTGCGCTGGCCGACTGAAAGTTCCTGCTTCCCCGCTAGCCGAGCCAGCCGAAGCCAGATAGTCGGCAGGCCGAGCAGCGCTTCCGTCATGGCAGCGACATCGGCGCTGTGGTCGATCAAGGAAAGGTACGAAACGATCTCTCCATCCTCGTTCCGTCGCAGCTTTGCCCAGGGACGTGGAATGGGAAACATCTCTAGGTACCCTGTTCTTGGCTTACATTGTTCTGCTCGCCTTGCGCGAGGTTGAATGATACTAATGCACCATCAGAATCTTTGACAATCAAATAGGATCAGGTATTTACGCCTTAGA # Right flank : TTTGGTTCGACGGTGAGGGTTCAGGAACCCAGCCATTACCTTGTGGATGGATCAAAGGATGGGACAGAATCCACCCCAACAGAAAAAATTCTGTAATTTCAACGACTTAATCTAAAGAAATGGCGGATAGGGTGGGATTCGAACCCACGGTGAGGTTTCCCCCACGCAGCTTTAGCAAAGCTGTGCCTTCAGCCTCTCGGCCACCTATCCAGCGCGGCGTTTGTATAGCCACTGACGCCTGTCTCGGCAAGCCCTATTGCACGCTATTCATTTCCTTTTCTCGGGATAAGTCATGCACCCCTGGAAGCGACGGCGATTGCCTGGGCAAGGTCGCCGATCAGGTCCTCGATCGCTTCGATCCCGACCGACAAACGAAGCAGGTCGCCGGGGACCGGGCTGTCGGCTCCCTCGATGCTGGCGCGGTGCTCGATCAGGCTTTCCACCCCACCGAGCGAGGTCGCACGGGTGAAGACCTTTGTGTTCGCGGCGACGGCGATGGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCGCCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //