Array 1 193474-191064 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSQA01000003.1 Bifidobacterium pseudocatenulatum strain TM04-13 TM04-13.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 193473 29 100.0 32 ............................. CACCTGACATCCTATTTTCCAAAAAACCGCAA 193412 29 100.0 32 ............................. AATACGAAGCATAAGGAGCTTGTCGCAAGCTA 193351 29 100.0 32 ............................. AGTACGGAAAGTATGCAGACAGCAACAATCAT 193290 29 100.0 32 ............................. GAATTAGTCAATTACTTAGGCATTGATAATAG 193229 29 100.0 32 ............................. TGCATGGTCTGCTGGTTGCTGAGGTTGGTTTG 193168 29 100.0 32 ............................. ATGCTCGGCTTCCATAAAGTCACCGTCAACCA 193107 29 100.0 32 ............................. GGCACGGTGATAACCTACGAGCCTGAGCAGAT 193046 29 100.0 32 ............................. TGGGCAACGCCTACGTCGAAAGGGGGCACGTT 192985 29 100.0 32 ............................. AATTGCTCTATGAGAATTATGAGGTGAGCGTC 192924 29 100.0 32 ............................. TCAGAAAACGAGTTTACCTCATTGCTGAGGAA 192863 29 96.6 32 ............................G CGTGGATTGACAGCGGATATGATAACAGCGTG 192802 29 100.0 32 ............................. GGCCTGAAAAGCGCATGGGACGGCGTGACCGG 192741 29 96.6 32 ............................G TCAGCTCGTTGCTGAGGTCCGGCTCGTCGCCG 192680 29 100.0 32 ............................. CGCAACAGCGGGTCGCCCGCGTCGTCGGTCAT 192619 29 100.0 32 ............................. AGTACGCGCTCATCGTCGAAGTCGAACACCAT 192558 29 100.0 32 ............................. AATTGCAGACAATCAGGGACATTTTCAGTTCC 192497 29 100.0 32 ............................. ATTATGACGTGCCCTTGGAACCTGAGTTTGGT 192436 29 100.0 32 ............................. TTACACGTAGACCTTGGACTCCCGGTCAGCGT 192375 29 100.0 32 ............................. GGGATTTCGGAACGCTGCGCATACACGAGCGG 192314 29 100.0 32 ............................. CATTGCAGTGATGCGAGCTTGTCGCCGTCATC 192253 29 100.0 32 ............................. TGTTTAAAATCGTCAATACGGGTCTGTGGAAA 192192 29 100.0 32 ............................. GGGTCGAACTTTTTTTGCGCACTCACGTAGAG 192131 29 100.0 32 ............................. CATTTAAGTGCGCTGGCGTCAGGATTTTGCGT 192070 29 100.0 32 ............................. TCTTACGGCAGCAGCAGCGTAAAATCAATGCG 192009 29 100.0 32 ............................. TGAGTAGCGTTTGTTCATAGAGAGCACCCAAT 191948 29 100.0 32 ............................. CTCAGTATCACCGGAAAACTCTTACGCTTTAT 191887 29 100.0 32 ............................. GAATTCCCGCAAGCGGATATCAGCCGGTGGCG 191826 29 96.6 32 ............................G ACGCCATCAGAACGTTCTTCGCCTCTCCCGAG 191765 29 96.6 32 ..A.......................... GCGGTCAAAGGCACGCACACGATCGAATGGGC 191704 29 100.0 35 ............................. CCCCCCCTCGCGGCGGATTGCGCGGCGTTTCTGAT 191640 29 100.0 32 ............................. TGTCCGGGCTGGAGTAGGTAGTGTCCGTTGAT 191579 29 100.0 32 ............................. TGTTACATTGGCGGCACGGCGACACCGGCTGT 191518 29 100.0 32 ............................. AAGACGCCGAAACTTGCGGAATGCTCGCCGCA 191457 29 100.0 32 ............................. CACGCGCCCTCACCGGTGGAATCATCCACCTT 191396 29 100.0 32 ............................. CCATCCCAATCATCCGAGAACCTGACGTTCTG 191335 29 100.0 32 ............................. GCCAGGCATCCGGCGATTCGCCTACCGTCACC 191274 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 191092 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 38 29 99.3 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACCAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGCGCCAAAAACACCCCCCCTTAAGTGGCTTTTCTCGAAAGGCATGTGCTATATGTAAGCGAGAAACCTCCGGTCAGATGCCAAATCTGCCATATATAAGCCAGATATCACGGTTCAGCTCAGATGAACTGGGTGTATGTCCATGCATTTCGATGA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //