Array 1 54545-53915 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWC01000005.1 Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54544 36 100.0 30 .................................... GGATAACCCCAAATGTTGTAAGTCACTTCT 54478 36 100.0 30 .................................... AGACTTGCTCAAACTCGTAACCATTCCCGT 54412 36 100.0 30 .................................... CTATGCTCCCCGTATTGATATAGCAGACTT 54346 36 100.0 30 .................................... ATTTAGCCCGGGTAACGCCGAAATGGTTGC 54280 36 100.0 30 .................................... TTCAATACGACAGCGAAAAATATAGACCAA 54214 36 100.0 30 .................................... TTAACACTCGCAGGTATATCGAAATCACCG 54148 36 100.0 30 .................................... TACTTGATTCAACCTGTCATAACGAAATTT 54082 36 100.0 30 .................................... AGAATTTAGCTCTTGATGACAGGACAAATT 54016 36 100.0 30 .................................... AGTTCAATATTGTACTTAATTTCATCTCGA 53950 36 75.0 0 .C............G........AC....AA.CC.A | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTTTTAGTACTCTCAAGAATTTAGTAACAGTAAAAC # Left flank : TTTTACAATCCAAATTAAAAAGCAACGGTAATACAACTTGGTTGGTTCTGTACAATATTGACAGTGTAATATCAGGAGATACTCAACAATCTCTTTTTATAAAATTAAAAGAACTAATGGATGATTTCGATCTTAAGATTATTTGTTTGAGCCATAATTTGGAGAACATACCTATAGATCGAACCGATGTAGAAAAGATAGTTTTGTGTACCAAAAATTTTCATCAGTTGTTACCAATTGATGAATTAGTTAAATCTATTGAATCTAGATATCCTAATAAATTAAACATTGGGCACAATGAAATCTTGGAATCGATTGTAAGAACTGTTTCATATGTTGGAGATGAAAAAAATGTTTCTCTTGCTGGAAAAGATTTGGTAATATTGAAGATACTAAATGATATTTTGAATTATGAGACGTCATACTGTTTTGAAAATCATTTATTATCGGATGCTGAGGCCGAATTTCTACAAGATTAGACGTTAATTTTTAGATTTGAG # Right flank : AAATACCACTCCAGTCCAAGCACAAAAGTGCAAAGACCAGAGCGGTATTTTTTATCCAAACTTATTTATATTTTTCTTCCAATCCACTCATCCAAAGTCCCAACAGGGTGCCAAGTACGAATGCGATCAAACTTAACGTAATAGTAGTACCAGTAACACCAGCATAAGAGATACTCTCAGCTGAATAGGGGTTAGGTACCAAGATCAGAATTGTACTTGCCAGCACGATTCCTAGAATAAAGTGATAAACACGTGAATGATGATTTTCAATCAAGTATTCCATCCCCTTGGAGAACAGTACCATGGCAACTATTCCACCAATAGTGATAGGCAAGAAGACGCCAACGATATCAAAGTTTTTGAATCCCGTCAGCATGGGTGTATACAATCCGAGTATCAATAACAGATTAGAAGGACTGAGTCCAGGGACCAGAACTCCCAATGCAATCAGTATTCCTGCCACAGTGAATCCTAGAAAGTTAGCGGGGATCGTTCCAAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAAGAATTTAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 275519-276148 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWC01000003.1 Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 275519 36 100.0 30 .................................... AACAATTAAAGCACAAATGTCTACTCTTGA 275585 36 100.0 30 .................................... CCACGACAGTACAGCAAGACATCAGCCAAG 275651 36 100.0 30 .................................... GGTAAATGTTACTTCAAATGAGCTGACCCA 275717 36 100.0 30 .................................... GGTGATCAAAAGCTTGATAATGTATCTAAG 275783 36 100.0 30 .................................... GCCACCGAATACGATACTGTGTTACCTGAT 275849 36 100.0 30 .................................... ATCCTAATGAAACAGGTAACGAAGCAAAAG 275915 36 100.0 30 .................................... TAATTTAATTTCCTCCTAAAGAAAAAAGGC 275981 36 100.0 30 .................................... TATCTATTCTCGAAAGAATGGGATTAGTCA 276047 36 100.0 30 .................................... AACTATATATTTAGGATAGTTGACCACTAA 276113 36 97.2 0 ...............T.................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTTTTAGAAGTACGTCATTTCATGTAGTTAAGAACC # Left flank : AGTTTTGAACTTAACTCAACTGGTAATTTGAAATTAGTTCTTCAAAAAATCGTCTCGGATAACCAAATTATTAATCACGACCGAATCGAAAAACTTAATCACGAATTAAATGAACTTATATTTGATTCAATAAGTAGTTATGATGAGACTTTTGAATATGATTTATTACCCGAATTAATAAAATTATTAAAATCCAAAGATTTTAAGATAGATAGTAGTAACTGGCAGAATTATTATGATAAACTTCAGTCAGTAGTTAGATTTTATGTAGAATTCAGTGATAAGAGATTATTACTGTTTCATGGGTTAGAACGCCTATGTAGTTTGGAACAACTTAATGAATTGAATGATTACTTAAAATCCATCAAGTTAGCTATAGTAAGTTTCGAATCATATCCAATGACATTGAAAAAGTCCGGCTTGAACACCCGAATTTATTCGATTGATGAGGATCATGTTCGATTTGACTATTAACACTTAAAGTTAACGTTAAGTAGGTG # Right flank : CTAAAAGCCATCCAACACAAAAGTTGAATGGCTTTTTTCATCCCCAAACACAAAAAAAGCCCAACCAAAAATCGGTCAGGCATCCCTATTAAAAAATTTACATATCAACCTTAATAACATCTTCAACACTATCATCAAAATCAATAATCATGTTAGCAACCTCTTCAGGTCTCTCGATCATTCCGACATGACCTGCACCCTTCAAGTCTTTAATCGTAAGATGTGGCACACGTCCGATGGTTGCTTTGGCGTCTTTAATACCAGCCTCAGTTAGAATCTGATCATCGTCAGAGAAGATAGCTAGTGTAGCAAATCCTGTCGCACGAAGACGTTTGTTCATAGCTTTGTCTTCCAAATAATCATCTGCCATTTTACTTAACTTCTTGGCAGTCTTACGATCAACAGCATTCGCAGCATCATTGATAACGTTAGGGTTCTTCAGCTTCGAAGTATCGAAGTTCTTGGCAAAATACAAGCTAGACTTAACTGGTGACTTAGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTACGTCATTTCATGTAGTTAAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //