Array 1 5240-6792 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXD01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4377 NODE_9_length_215299_cov_75.958554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5240 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 5301 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 5362 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 5423 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 5484 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5545 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5606 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5667 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5728 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 5789 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 5850 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 5911 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 5972 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 6033 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 6094 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 6155 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 6216 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 6277 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6338 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6399 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 6460 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 6521 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6582 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6643 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6704 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6765 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23107-23624 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXD01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4377 NODE_9_length_215299_cov_75.958554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23107 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 23168 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 23229 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 23290 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 23351 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 23412 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 23473 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 23534 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 23595 29 93.1 0 ............TC............... | A [23622] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //