Array 1 7872-5258 **** Predicted by CRISPRDetect 2.4 *** >NZ_APIL01000002.1 Listeria monocytogenes SHL012 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7871 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7805 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7739 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7673 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7607 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7541 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7475 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7409 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7342 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7276 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7210 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7144 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7078 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7012 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6946 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6880 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6814 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6748 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6682 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6616 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6550 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6484 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6418 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6352 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6286 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6220 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6154 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6088 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6022 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 5956 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 5890 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5824 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5758 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5692 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5626 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5560 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5494 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5428 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5362 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5296 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5261,5264,5269] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //