Array 1 316563-318116 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNK01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1580 NODE_2_length_442059_cov_3.00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316563 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316624 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316685 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316746 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 316807 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 316868 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 316929 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316990 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 317051 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 317112 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317173 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317234 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317295 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317356 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317417 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317478 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317539 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317601 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317662 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317723 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 317784 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 317845 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 317906 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 317967 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318028 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318089 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334249-335664 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNK01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1580 NODE_2_length_442059_cov_3.00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 334249 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334310 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334372 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334433 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334494 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334555 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334616 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334677 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 334738 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 334799 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 334860 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 334921 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 334983 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 335086 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335147 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335208 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335269 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335330 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335391 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335452 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335513 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335574 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335635 29 96.6 0 A............................ | A [335661] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //