Array 1 1138833-1142788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTEB010000001.1 Clostridium saccharoperbutylacetonicum strain DJ048 Ga0423222_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================== ================== 1138833 29 100.0 37 ............................. AATGAATGGAGACAAGTTCTTAATTTACCGCCTAAAG 1138899 29 100.0 37 ............................. TTTACCTAATGCCATTGCAATCAACCTCACTTTCTTC 1138965 29 100.0 36 ............................. TTGGTATTTTCATGTAAAACTTTCCTGCATCACTTG 1139030 29 100.0 36 ............................. CATGGATATTATTCATATCAATTTTATGTTCATCAA 1139095 29 100.0 36 ............................. TTTTCTTCATGTTTTTAAACCAGTTAACTATTTCAG 1139160 29 100.0 36 ............................. ATAGGCTACTCTCTGATTGTTCTTTTTTGGCGTTAC 1139225 29 100.0 36 ............................. TATTAAAAATAAATAATGTATCTGTTGTATTTTTAA 1139290 29 100.0 36 ............................. CTGCTTTATATGGAACTTATTACAATGCTTATAGAG 1139355 29 100.0 36 ............................. TTTAATTATTTTAATCTTCCATTTGAATCTATTAAA 1139420 29 100.0 37 ............................. AAATAAGATTTCATAAGAGTTAACTTATTACCTCTAA 1139486 29 100.0 36 ............................. ACAACTAAGATACCATCCCCATCAATTATATATTCA 1139551 29 100.0 36 ............................. CCAAATTTCACGTTCCAGCCTCTTTTTTTCTTTAAA 1139616 29 100.0 36 ............................. CTTGCTGCTTTTCTTCTTTTCTTCAATTTCATAAAG 1139681 29 100.0 37 ............................. TTTGAATTTGTTTTTGTTCATCAAGTTTCTTGTCTTC 1139747 29 100.0 36 ............................. TTTTCAAATGCCATAGACATTAATTGTTTTGTTAAG 1139812 29 100.0 37 ............................. TCAAATTAATTGTTTCATTAACATGGTCACTAATCAA 1139878 29 100.0 37 ............................. CTAATCATAATTTCTGAATTTTGAAGCTTTCCACATT 1139944 29 100.0 36 ............................. TATTTTTATTGCTTTTTTCTTGCAATAAATGTATAA 1140009 29 100.0 37 ............................. TGGTTTACATTTGTTATTGTAGATATTAACACATCAT 1140075 29 100.0 37 ............................. AAAGAAATAATGATAGAGTACATTAAGGATAATGTTA 1140141 29 100.0 37 ............................. TCGTTTTTTACATAGTTGTATGTTCTTTGAATTCCAT 1140207 29 100.0 38 ............................. AAAGATTGGAGTGTGCCAGTTCCAATAACTTTTAGAAC 1140274 29 100.0 36 ............................. ATTGAAGAAATTAAAGAATTGAAAGAATTATAATCA 1140339 29 100.0 36 ............................. AAAGGAGATATACACATGAATAAAAGAGAAAGAATA 1140404 29 100.0 36 ............................. CTGGACCATATGTTTAATAATGAATCAGTTCAGTTT 1140469 29 100.0 37 ............................. AAATTTTTATATTTCATAATGAAGTCAATCGCATCAC 1140535 29 100.0 38 ............................. GATAGAATGGCTAATATTATAAAAAAATTTCTTAATGC 1140602 29 100.0 36 ............................. TGGAGTAATATTCCCTTTATGTTCTATATAAATTTT 1140667 29 100.0 36 ............................. CATATATAATTTAACAGATTTATAAATTTTGTCAAT 1140732 29 100.0 36 ............................. CCTTTTAATATTGTCTAAAACTATCAGATTTCCAAA 1140797 29 100.0 37 ............................. TCAATATATTCCATGTTATAAACGTCATAATGTTCTA 1140863 29 100.0 36 ............................. ATAGGATAAAAGTTAGAGTAGATTTACTAGTAAAGG 1140928 29 100.0 36 ............................. TAGCTCCACCGCTTGTAGCTACAACACCAACCATAG 1140993 29 100.0 102 ............................. TATTATTATCGTATTTATCAGCTTTCAATAAGATAAATGCAACTACATTTAAACAGAATGTAAATTATTATTATCGTATTTATCCCAAAGCCAATAGTCTAA 1141124 29 100.0 36 ............................. TAAGATGGTTGATAAGACTATACGTGAATATTATGA 1141189 29 100.0 37 ............................. AATGCTTCTAAATCACTTATGACGCGTTGTTGCATAG 1141255 29 100.0 36 ............................. CAATGAGTTTAGATGATGAAAGTTTAACATTAATTG 1141320 29 100.0 36 ............................. TTAGATCATCTATTCAATAATGAATCAGTTCAATTT 1141385 29 100.0 36 ............................. ATTAAATGGTTGCTTAAGAATAATAAAAGATATCAC 1141450 29 100.0 36 ............................. CATTCTCCTATCTCAATAAATGAATTATTATTTTAA 1141515 29 100.0 36 ............................. ACGCAATCACCATTTAATATTAAAATTCTGAAATCT 1141580 29 100.0 37 ............................. GTGGAATGTTGCCATCCACGTTACAATCTTGTGTTTT 1141646 29 100.0 37 ............................. CTTTATGAATTTAAAAATACTGATATATCAAAAGTAA 1141712 29 100.0 37 ............................. ACCATATTAGCCATTTTAGCTTCAAATGATAAATTTG 1141778 29 100.0 37 ............................. TTTTCCTCAAAAGAAAGCTTATCCTTATCGATTGAAG 1141844 29 100.0 35 ............................. GCTTACGTGGCAACATACAAAAAGTTTCTTTATAC 1141908 29 100.0 37 ............................. AACTTTGTTATAGCTTCTAAAGAAAATATTATTACTA 1141974 29 100.0 37 ............................. TGATTATAACATTATCATTGATGATATTTTTGTACAA 1142040 29 100.0 37 ............................. GGCATATATTTTGTTGTTGTATACTCAAAAATGTGAA 1142106 29 100.0 36 ............................. TGCATTAATACCATCATGCCCGACATTGCTTCTTGC 1142171 29 100.0 36 ............................. AAAGGTACAATAGATAGATTTACAAGTGATATTTAT 1142236 29 100.0 37 ............................. TTGGTATCAAGACTAGTTTCAATAATTATTTTTCCAT 1142302 29 100.0 36 ............................. ATTACTAGAATGGGAGGAAAAAGCAAATTAAGAAAC 1142367 29 100.0 37 ............................. TTTACTGGCTCCTTTGTAGCCCCTTCTAGTGTAAATT 1142433 29 100.0 37 ............................. CTGTTCTGCCTTCTTTTTGTGCTTTGGATATTTCGGA 1142499 29 100.0 36 ............................. TATATTTATTACATCAGTTAAATTTATTTCTCCTTT 1142564 29 100.0 36 ............................. AAATTATTATATGTTTAGAGAAATTGGGTGGGCTAA 1142629 29 100.0 37 ............................. GAATGATGTGAACCACCACTACTTCCACCAGTTGTTG 1142695 29 100.0 36 ............................. ATTTTAATCTTTGACCATACTACTATTTCTCTTTTA 1142760 29 96.6 0 ..........G.................. | ========== ====== ====== ====== ============================= ====================================================================================================== ================== 60 29 99.9 38 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : ATAAAAATGGCAATTGAAAATGAAGAATATAAGCCATTAAAGGCGTGGTGGTAAGATGTTTATAATATTAACATATGATGTTGGAGAAAAGCGGGTAAATAGAGTGCGGAAATGTTTAAAAAAATACTTAACTTGGACTCAAAACTCAGTATTTGAAGGAGAAATAACAGAAGGAAAATTACATAAATGTCTAGCTGATGTTAATAAATTTATAGAAAGAGATGAAGATTCACTCTATATTTATATGGTTAAAAATATTCACAATATAAAGAAAGAAGTAATAGGACAGCAAAAGAATTATGATGAGCTATTTTTGTAGTTGCAGTAAATCAATTTTGGGTAAAAGATGTTTTAAATCAGCATAAATTCTAGCTTTAGAGTAATAATATCTATAAACACTATTTCCATACTAAAGGTTTACCGCAAGAATATAAAAATTAAATCAAATTTATCAGCGATAAATGGCTAATTTACTAGAGTTATGGTATACTTTTTTTAGG # Right flank : TTATGATGAAAAATGAACAATAAAAGATTCAGCTATTGTTTTATATATTGTAATTCAATAAAATTATAATAAGTATGTTATAGAAAAAAATATATGACATAGTGATGCAGCACATCAAAAATTATTTAAATATATATAGAATGACTAGCAATGGATATCTCTTATTATTTAATTTTAATAAAAATAAATAATAAGAGTGAAAAATATTTTATATAATAAACAAAATATTTGAAGATAGAGTATAGTTGATACGTTGACAAGGAGATAAGGAATAATGACTTTACAACAATTAAAATATGTAGTAACCGTTGCAGACAAAGGAACAATTAGTGATGCAGCTAAGGAATTATTCATTTCTCAGCCTACAATTACTAATGCTATTAAAGATTTAGAAAAGGAAATGCATATTACTATATTTAATAGAACTAACAAGGGAATTGTAGTTTCAAATATAGGAAATGAATTTCTTGCATATGCAAGGCAAGTACTTGAACAAGCTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 5782531-5782370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTEB010000001.1 Clostridium saccharoperbutylacetonicum strain DJ048 Ga0423222_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 5782530 30 100.0 36 .............................. GAGGAATGATGACAGGCAATGAAGTAAGAGACTGGA 5782464 30 100.0 35 .............................. TAGAGTACAGGATGTGTTGTTTGCATTTTTTGAAA 5782399 30 93.3 0 .........C.....T.............. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GATTAACTTTAACATGAGATGTATTTAAAT # Left flank : TATATCCGAGGGTGAAAGGTGATACTCCTATAGTTAGCTCGGTATATCAATTGTCAAATGAGGAATTGTTTGATGAATCTACAAGACCGAATGAGGAGCAGAGAGAAGAAATGAAAGAAAAGATTAAAAATGAAATTGTACGTCTACTTTCAAGATAAGTATTAATCTACTTATATACATCATACTTAAAATAGTAATAGTGAAAACTATTATAAATGGAATCATACCTATCCCTCCAAGAATCATAATTGTATTAATTATAACACTTATTCAATTTTCAAAGAACATTTTTTAGTGGTTTTATAATTCAATATTTCTAAATTTCATCCCAGCCATAAAACAAGAAAAATTTCATGAAAGTCGGTGAAAATAAGGCATAAAGAAGAACTTTTTGAGTGGTAGCTAAAATTCATAAAACAGCTGGTAAATTTCTATGAAAAAGTTGATTCTAAGCGGAATGGATGGTATTATTGATTTTAAGGAATGGCTATTTTGCTATG # Right flank : CCCAATAGTTAGTACGTCCTATTATTTTGTAATAAAAAATATCACGATATTCATATATTATTCTGAATATTGTGATATTAAAAATTGTTGTTTACAATTTAGTAACTTATTTAATTTATAGTTAATATTCATTCAAATAAGTCTGTAATAGATCTGCTAACTTTCCGATATGTATTCCATCGACAAATGAATGATGTGCTTGTATGGAAAATGGAAGCATCATTTTTCCATCTTTCTCGGAATATTTTCCCCAATCAAATAATGGTGTGGCATTATCCTTTTTACCAGAATTAGTATGTGAAATATGTGTATAAGATATCCATGGTAAAGGTGAAAATTGAAATATATCATTACCTAATGGACCTGTAAAGTACTCCTTTTGGTTTGAAGCTGCCTTAGTGGCCTCAATTACATATTCCTCCAATGTATCTTTCTTCAACATTAACAACTTTAAATAACTCTGTTTCCTTATTCAAATAGGTAAATGCAGTATCTATTCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACTTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //