Array 1 18315-22392 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTBM01000015.1 Neisseria zoodegmatis strain DSM 21643 NODE_15_length_79920_cov_35.0277_ID_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18315 32 100.0 36 ................................ TTCGCGCTGCAAGCGCGTACCGATGCGGGTAAAGAG 18383 32 100.0 35 ................................ ATATTCGGTCATCTGAACTGTTCCCCCGCCTGAAT 18450 32 100.0 34 ................................ AGGTTAAAATCAGCGCGTAAACTTGAACGCAATA 18516 32 100.0 35 ................................ TCATAAATCCTCTCAAAAAGGACTACGAAATGAAC 18583 32 100.0 34 ................................ ATTGCGTGTCTGCAGTAGCGGAGAAGATGGCATG 18649 32 100.0 34 ................................ ATCCGCCTTCGGGCGGATTTTTTTTGGCCTAATC 18715 32 100.0 33 ................................ ACAGCATACGTCAACAGCGCGGCAAAGCAAGTT 18780 32 100.0 35 ................................ TTTATCAGCAATGATGCCGACTTGGCCTTGTTTAA 18847 32 100.0 35 ................................ AAGAAATTCAACCAAACACAAGCCGAAAAGCTGGC 18914 32 100.0 34 ................................ TCGATGTGGCCGAAATCAGACTTAATCAGGTTTA 18980 32 100.0 35 ................................ AACAATAAAAAAACGGCCTTGAATATTACGCTACC 19047 32 100.0 34 ................................ GGGCAAAACCGCATCAATCGTGCATATGTTGATG 19113 32 100.0 35 ................................ GCCTTTTATCAGAAAACCTAATAAATCAGATTCAG 19180 32 100.0 34 ................................ AAGTAATGCAAAGGTATGTTAAATTCCTGCTTTC 19246 32 100.0 35 ................................ CACCAGTTTGCGGTCGGCCAAATAGTCAAGCTGCT 19313 32 100.0 34 ................................ AAGTGGAACGAAAACCAAATCAGAGTACGCGAGA 19379 32 100.0 34 ................................ CATATACCGACCTGAACACCCTGATCCTGCATGG 19445 32 100.0 34 ................................ CGTATTGTTGAGGCAACTGCCGATGAAATTATTC 19511 32 100.0 33 ................................ ACCATCAAAGTCCCCTTAAAGGTCAAAAAACCG 19576 32 100.0 33 ................................ GCCAAGTCGGGTCTTGTTGCAGCTTGGCGGGCA 19641 32 100.0 33 ................................ CACTCAAGGAAAGTGATGCCGACAATTGTCAAA 19706 32 100.0 34 ................................ CAGACAGTATGCTATATCGTATGGAAAATTTGCG 19772 32 100.0 33 ................................ TCTTGTTGCGAGCAATACGGCGAAAGCAAAGGC 19837 32 100.0 35 ................................ CGTTGGCAGAGGGTAAAATACAGCTGCTACCGCCA 19904 32 100.0 32 ................................ CCGACACGATGGACATTCTGCCTGCGCCCCAA 19968 32 100.0 34 ................................ AATAAAGCCGGTTAAAAAGGCCAAGCCACCTTCT 20034 32 100.0 34 ................................ AAGCGCCAACGCATCCAGCACGGCAACCGGCAAC 20100 32 100.0 35 ................................ CTAGCTCATCGCTCCCCCGAACTATTGAGTTTTTG 20167 32 100.0 34 ................................ GACGAGGGTGTCTTTTTTTGGATTTGCCATAGTC 20233 32 100.0 35 ................................ TCGTGGTGCGTCAGGCAACTCGATTAAACAGGAAA 20300 32 100.0 35 ................................ TACCAGCCGCATAAGTGCGAGATACAGCCTACACA 20367 32 96.9 34 .................A.............. ATCTTCATTTTGTTCAGCTTTCTGAAACTGCGTG 20433 32 96.9 33 A............................... ACTGCTGGAAACGCAGGATTGGGCGTTAATTAC 20498 32 100.0 34 ................................ TTTGTCTTGACCGTTGATTGGTTGCTCACAATCA 20564 32 100.0 34 ................................ TTTGTACGCTGAGGACAATATCTATACAGAGATA 20630 32 100.0 34 ................................ CCGCAAACCTGCGATGATGATGTGCTCGAAACAC 20696 32 100.0 35 ................................ TGGAGACGGTACAGTTTTTGCAGAAAAAGGGTGTG 20763 32 100.0 34 ................................ CCAAAAAACCAAGTACGCAGCCCCCAAAGTAAAA 20829 32 100.0 36 ................................ CAGACCCGCGCGCAGGCCGATGCGTTTTTGGCCGCG 20897 32 100.0 37 ................................ AGAGAATGGCAATAAAGCCGCTGAACAAATCGCGCAG 20966 32 100.0 35 ................................ GTGAGTGACCAGCAGCTCGGAAGACACGGGCGGCA 21033 32 100.0 34 ................................ TCATGCAATTGGGTAAGCGGGTTGATGCCTGCGG 21099 32 100.0 34 ................................ GGAAGACGAATTTACCGCCCTGTTGAAAGAAAAA 21165 32 100.0 34 ................................ TGATTAAATCTTACCGCTACCCTTAAGCAACTCG 21231 32 100.0 35 ................................ TATTGGAAGTAAGCTGAAATCAGGGTAATCTGAAA 21298 32 100.0 33 ................................ AATTTCTGTGTCGGCTTATTTACTACCGGCAAA 21363 32 96.9 34 ...............................T CCCTTGCCATTTTGGGCGTTGTAGCGGGGCTTTA 21429 32 100.0 35 ................................ CGGCAAGGCCGCCCAAAAATCCGCCCGCTGCTGAT 21496 32 100.0 34 ................................ TTGATTTGTTCATGATAAGTTCCTTTACAAATTT 21562 32 100.0 35 ................................ TATCAAACCCATAAAGAGGAGATGGAGCGCGGTGC 21629 32 100.0 36 ................................ AAGCATTACGCCGTGCATGATTTTGCCGAGTTTTTG 21697 32 96.9 34 ........T....................... CTCTATTACGGATAAAGTAAATGACATTTACACT 21763 32 100.0 35 ................................ CACCAAATCATTTAAGGGGCGCCGCTCTTCCGCAG 21830 32 100.0 34 ................................ ATGTGTGAATTTGTAGAAACGGGCAGCAATGTTT 21896 32 100.0 35 ................................ TACATATCCCCCCAAGTCCCCCGGCGCAACAGATA 21963 32 100.0 34 ................................ ATGCCGCGATGCATGAGGCGATGAAGTCAGGCAA 22029 32 100.0 34 ................................ TACAAACAGAATGCCTGTGCTTTTTTGATAGCCA 22095 32 96.9 34 T............................... AAGCTCCGCCTTGATGGTCTCGAGCATTGGGTAT 22161 32 93.8 35 T.......T....................... AGCCGCGAACTGACACCGGTGTTGCAAGCCAAAGG 22228 32 96.9 35 T............................... GACGTGCGCCTGCGCTACGACGAAATCGACGCATG 22295 32 96.9 34 T............................... AGATGATGCCCCAACACATCTGCCGCGTGCTGAT 22361 32 93.8 0 T............A.................. | ========== ====== ====== ====== ================================ ===================================== ================== 62 32 99.4 34 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAATAGGGGAAATAGCATGTTGATGTTGATTACTTATGATATTTCGCTGGAAGATGCAGAGGGGCAGGCGAGGCTGCGGCGCATCGCCAAACATTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTTACGCCGGATCAATGGGTAAAACTGAAGGCCAAGCTGCTGGATACTTACCAGCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAACATCACGGCGCGAAAGCGGCGGTAGATGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAACATGGGGAGGTTAGCGATGCGGAATTGTTCTTTAACAATCAGGACATTAGGAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTCGCTTTTCGCGTTTTCGGAGAGTTTTAGCGAATCAGGGCCGTGCAAGCCTTGATGGATAAAGGTTTCTGAGAAGGCT # Right flank : CTTTAAACCATGTTTAAAGGGGCTTTTATGAGCGGATGTAAGGGCGCGCGCGTTTTGTCATTGGTTTGCATTTTTTTTGTCATGCACTGGTGGGAATCGAGCCATGACAAAAGCAGCGCAATTTTCCGCCATCCACACTAGAATTTAAAAACCATATTATCCACATATTTCGCCCTTGTAGAGACGCTTGCTGTGTAACTTACATGCTCCATCCCATCAAATACCGCCCAATCGTCAGGGCGGCATTCTTTTATGAAATCCAAATAATCCATAAACTCGCTGCGTGTGCTGCTGAAGAATACGAAAGGCGGGCGAACCATGTGGATAAGACGCAAAAACTCAACCATGCCGAAGTAATTTTGGTTGGCATACATGCCTTGTAATGTTGATACATACGGGGGATCGAGTACGAGCAGGGTATCGGGCTGCGATGTATATTGGGGCAGCAGGGTTTGAAACGGCTGGGAAACAATCTCTAATCCTTTCAAATAGTATTCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 63706-63871 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTBM01000015.1 Neisseria zoodegmatis strain DSM 21643 NODE_15_length_79920_cov_35.0277_ID_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 63706 32 100.0 35 ................................ GGCGGCATGGCCGGACGCGGCCGCAAAGTGAAAAT 63773 32 100.0 35 ................................ ATACAGACGAAGAAAAAAGCATAGCGGATGCAATA 63840 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 36 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAACCCAAACCGCTGCTTCTGCACGCGCGTCAAAGGCGACAGCATGTTTCCCACTTTAATCGACCTTGGCACGGTTTTATGGTGTGCAACTGCCAAATACACAGAGGAAGGTATCTATCTCTTCCGACAATACGACGAGATCAGAATCAAACGCCTACAACGCCTGAATGCCCACACCTTTAACATTATTAGTGATAACCCGAACAAAGGGATATATCCAACAACAGAGTTGGATTTATCCCAAACCGAGCCGCATGATTTCGAGATACTTGGACGCTACCTGTGGAGCTGTGGCATAGCCAAATAATCGAATCTGATAATTCCACGATTATTCCATGACAAAAAACGCGCAAAAATGAGCATATTTCAATCATTTTTGCGCGTTTTTTTGCGTTTTAAATTTTCACCTGATTTTTTCGTTATTTTTTGATTTCCTTAAATTTTTCGCGTTTTATGTAGTTGTATATCACATGACAAAACTAACACCACCCCACAGCGGA # Right flank : CTACAAAAACAAGCCGGCCAACTTGAAAAAAAATCGTCAGCTGCCCTCAGCCGCCTAATCATTGAAAAATTCAAACGTTACCGTTTTAAATCCCCAAAAGAAACAGACGACTTATCTGAGGCCGTCTGAAAAATCATCTATTTCCAAATACCTAAAAATCCAGCTACAAACTAAATGAATTAGCTGAAATATTTTCAGACGGCCTCTCGGTTTTTTTAGTATGTTTGAAAATCTGTATCCTGCTGAAACCAAACAATTTTCCGTGCATTCACCCAAAGCGGCCATTCGCTGCCGGGTTGTAGGTTGAGATTATGGGTTTCCGAGGGATCGAGGTGCAGCTGTATTTCGCCGTGTTGCGGGTGGATGAGTATGAGTAGGCTGCGGTCGGGCAGGCGGGTGTGGGCGGTGATTTTGGCGTTTTGTCCTTGAGGGTGGTTGAAGTGTATGGCTTGTCGGGGAATGTAGCGGGTGTCGTTGACGTTGTCGGCGCCGATCAAACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 69553-70430 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTBM01000015.1 Neisseria zoodegmatis strain DSM 21643 NODE_15_length_79920_cov_35.0277_ID_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 69553 31 100.0 34 ............................... CTTTGTGCAGGGTTTGGTGCTCGTAATCGACCAC 69618 31 100.0 33 ............................... GCACAGCTCAAATATCCGTCCGCTCGCCCGTCG 69682 31 100.0 34 ............................... AACGCTACTCAAGCACAACAAATCAGCACCGTTA 69747 31 100.0 34 ............................... CAGCCCGTCTAAATAATCATCAGCAGGCGCATAA 69812 31 100.0 34 ............................... GAGCCTTTGGGTAAGCAAAACCGCTGAAACGGTG 69877 31 100.0 34 ............................... ACCGTAGTAATAAAGTAATTCGGCTTGCTTTTCT 69942 31 100.0 34 ............................... ACACATATCGCGTGTGGCAGACAGGATTAAATTA 70007 31 100.0 35 ............................... GCAAGTTGGCCGAAGCGGTCCAAGTATCGTTGACA 70073 31 100.0 34 ............................... TTTACAACAAGCTTAAACCTGAAATTGATTTGCG 70138 31 87.1 34 ......G...T.G.C................ AGTAAAAGAAACCACTTTAGCAGAATAGCCTTTG C [70149] 70204 31 96.8 34 ..........C.................... CAGCGGCCAAAGTAGCTTGCAAACGGGCGGGCAG 70269 31 93.5 34 ..........CA................... GGCAAAAGCAATCACATTTGCCCCGCTGCCGCAG 70334 31 90.3 34 ..........T........A..C........ TACAAAGTACCGAATCAGCGAAACGCAGGAAGTG 70399 31 80.6 0 ..........T.....AT.....TA.T.... | T [70408] ========== ====== ====== ====== =============================== =================================== ================== 14 31 96.3 34 TCAGCCACCTGGCGTGGCTGTGTGTTGAAAC # Left flank : AAAAACAGCTCGACAACCAAAAAAACGTATCCGTTAAATCGTTTGTGTTCGACTCGGGAACCGTTGCCTATGACTTGTTGGAAAGCAAAATCAACAGCAAACTGGAAGCAGCGCTCGGCACACCCGCCGAAACCGCAACCCAAGCCGCCCAGCCTGCCGCTGGAACAGATTACGCCTATCGAAATACGGCCACGGCCTCCGTATCGGACGATCCCATCGTTCTTATGATTTGATTGCTTGTTAAATAGGCAATTGAGGCCGTCTGAAAATTTTCAGACGGCTTCTTGAGCATATGCTACCTATTTGTTTGGGCGGAATAACAAATCAGCGCCAACCCGCAGCAAACATACGAAAGCTGCAAGGTTGGCGAAATTTTTTACTCAGATATTCAAGCGATTAAAACCAAGCCGCTGTGATATAGTCTGCTCTGGCATCTTTTTGAACCGTTTGGCGAAAATCGGGATTTAGATGATTGTCGGATAACGGTTTGGGAAGAGGCT # Right flank : CCATCCCTCCAACATAAGAGGCCGTCTGAAAACTGTTTTCAGACGGCCTCTTATCATTTCAAATGCCTTAAATGCGTTTTGCCAGTTCTTCGGCTTTGCCCACATACAGCGCGGGTGTTAAAGCCAGCAGCTGCTGTTTGGCATCGGCGGGGATGTCCAGCGATTCGACAAACACTTTCAGCACTTCGGGCGTGATGCCGTCTTTGCCGCGGGTGAGGTCTTTCAGTTTTTCATACGGATTGGCCACGCCGTAGCGGCGCATCACGGTTTGAATCGGTTCGGCCAAAAGTTCCCAAGTGGCGTCCAAGTCGGCGGCTAGGGCGGCGGGGTTGGCTTCCAGTTTGTTCAGGCCGCGCAGGTGGGCGACCAAGCCCAGCACGGTGTAGCCTGCGCCCACGCCCATGTTGCGCAGCACGGTGCTGTCGGTGAGGTCGCGCTGCCAGCGGGAGACGGGCAGTTTTTCCGAAAGGAAGCCCAACACGGCGTTGGCCATGCCCAAG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTGGCGTGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCACCTGGCGTGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //