Array 1 194605-195670 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATD01000011.1 Salmonella enterica subsp. enterica serovar Montevideo strain SMo01 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194605 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 194666 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 194727 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 194788 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 194849 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 194910 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 194971 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 195032 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 195093 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 195155 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 195216 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 195277 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 195338 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 195399 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 195460 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 195521 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 195582 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 195643 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211806-213299 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATD01000011.1 Salmonella enterica subsp. enterica serovar Montevideo strain SMo01 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211806 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 211867 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 211928 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 211989 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 212050 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 212111 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 212172 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 212233 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 212294 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 212355 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 212416 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 212477 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 212538 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 212599 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 212660 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 212721 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 212782 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 212843 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 212904 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 212965 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 213026 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 213087 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 213148 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 213209 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 213270 29 93.1 0 A...........T................ | A [213296] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //