Array 1 23431-25966 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMM01000039.1 Helicobacter muridarum isolate 216_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 23431 36 100.0 30 .................................... TCTCCTCCCTCTACTACAATGCCCAATGAG 23497 36 100.0 30 .................................... AAAACCAAATAATGTTACAAATCCCTACGA 23563 36 100.0 30 .................................... TTAATCCTGCGATAGAGTTCAAAAAAGGGG 23629 36 100.0 31 .................................... TAACAATTTGATTTTATCAGCTAATAAAGAT 23696 36 100.0 30 .................................... GATTGAACGCTATAGTTATCACTAAACCAA 23762 36 100.0 30 .................................... TTTCCATCTAATTTTAATGCTGCGCTTAGT 23828 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 23894 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 23960 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 24026 36 100.0 29 .................................... AATATTACATATTCGAGTCGCGGTTCTGT 24091 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 24157 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 24223 36 100.0 30 .................................... TGATGAATTCGACAAACTATCGGATGCATT 24289 36 100.0 30 .................................... CATCAAATAGTGCTGCTAAAGATGAATATG 24355 36 100.0 30 .................................... TCTACAGCATCGCCTACTAAATGACGAGAT 24421 36 100.0 30 .................................... TCTTGATTGACGCGTAGCATTTGTTTTAAT 24487 36 100.0 30 .................................... ATCTAGTTTTCTTTTTTACGCAGAATGCAG 24553 36 100.0 29 .................................... TTTACCTGCCATAAGATTTATGGATTCTG 24618 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 24684 36 100.0 29 .................................... TATACTCACCGACAGTATAAGAAAGAGTC 24749 36 100.0 31 .................................... TATTATTTCGATGACTTCATTGACTACGAGT 24816 36 100.0 30 .................................... AAATTTAAACGCAGATTTTGTTTTGAATTT 24882 36 100.0 29 .................................... ACCAACAGGAAGTAATAAGTTCCCTATGC 24947 36 100.0 30 .................................... AATTCCGCGCTTTTTAGCTTCTGCTTCCAA 25013 36 100.0 30 .................................... TGCGAATTAATGAAGTCTTACAAACTGCTG 25079 36 100.0 29 .................................... GATCCGAAATAACTAAACCCGTGACTCCA 25144 36 100.0 30 .................................... TATGAAAGAATATAGTAATGTTGGTATGCA 25210 36 100.0 30 .................................... TGTTCAAAGGTTTCAGGTATGTGGGAGTCT 25276 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 25341 36 100.0 30 .................................... TATCGTTTGCAGCTCCCCGAATATCTCGGT 25407 36 100.0 30 .................................... AAATTATTCCATATCATGTTGTAAGCACGG 25473 36 100.0 30 .................................... AATCCAATCGCAAACCAAGGAATATGAAGT 25539 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 25604 36 100.0 30 .................................... TAAGAAGCGTAAGATGGAGACGAGACGCGA 25670 36 100.0 30 .................................... TGGCTCTTTACGGGGGAGACCACATTATCA 25736 36 100.0 29 .................................... CACCGCCGCCGATAAGTGCGCTTGTGATG 25801 36 100.0 29 .................................... TTCTCTTTATACCCTGCGTATACATAGTT 25866 36 100.0 29 .................................... TACTATATCTGCGGCGAATATGGTTCACT 25931 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Left flank : ATAGTCAAAACCCCAATGATGTTTAAAATTGCTCAAGATGTAGCAAACGCGGCAGGAAAACCTTTTGAGTGGGGAATGGAGCAATATGCAAAACATATTACATTAAAGCGACTAAGTGAACCTGAAGATGTAGCAAACGTAGTAGCATTTCTAGCTAGTCCAGATTCAGATTATATTACAGGTCAAGCGATAGTAGTTGATGGAGGTATGTATTTCAATTAAGAAATTGATAAATTTATACTCTTAGTAGTAGATGATTAGGATAACGGATTTTTCTTTAAAATCTTGATATAGAAATTACATAAAACTGTTATAAGGTTGTTGCTAGCTTTTTACTAGCAATGGATTTATTAAGCTTCAAATAAAAACTCTTAATTTATTAAGAAATAAACTTAGCATCTTAGTTATGAAGAAGCTAAAAATGAATTAGTTACATTAACCTGATGATTATAATAAAGTTTTAAGATAATTAATTTAGATTAAATATATTAAAGTTAGCT # Right flank : TACACTACCTTGAAACTGCGTATTTTAGGATATTTGATAAGTTTTAATAACACTAAATACTATAAAATATTTAGTGTTATTGATAAAATTTGGGATATAATTCAAAAATGGTTTAATAAGTGGCTAAAATAAGGGAGTTCAGGATCTCCCGCAGGGTTACAATCCCTAACAAAATCCTATTTTTACTTTAAGCTTAAATATTGGTTTATATCATGCTAAGAGTAAATTCTACATAAAAATCATAATATCAATATTTTTTACTTTATTTAAGTCACGTTGATATATCTGCCTTTAATATATTTCTTAATCTATACAAAGATTCAAAAATATACGTAATTAATCACAAGTCATATTAAAAAAGCGTAAGCTCCTTTGGCTTATTTGCCTGTTCATTATTGCTTATCTTACCAAGCAAAAGTCTCATGTTATCAAATTGCTTCTCTGTGAGTATTAATGCCCTTACATGCCCTCTTGGCGGCAAGAATAAACTAACTCTATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //