Array 1 19350-23102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHN010000039.1 Clostridium perfringens strain 1805-51 NODE_39_length_26028_cov_55.1369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 19350 29 100.0 36 ............................. TCAGCAAAAGCTCTAAACTCTAAAACTTTTAAATTA 19415 29 100.0 36 ............................. TATCAAGTAAGTAAAGGTGAAGAATTTATTGTCTCT 19480 29 100.0 36 ............................. TGAACTTCTTTATTTCAGCTAACTTTTCTTTATACT 19545 29 100.0 36 ............................. TAGTAACGCTTCGCTCTATCTGCGATGCCACTTTAA 19610 29 100.0 36 ............................. GTTTTTATCCCACTTGAAAATGGTTCAGTGCTAAAC 19675 29 100.0 36 ............................. GCATTAGTTGGTGTTACATTATTTGAATTGTTCTTT 19740 29 100.0 37 ............................. GTACTTATGGCTTTAGGAGCATTTGTTACAGGAGTAG 19806 29 100.0 36 ............................. TTCTTTAAAAAAAAATAACAGCTATGCTACGGCTAT 19871 29 100.0 36 ............................. CCATTTAGTTCATTTATTTTCGCAACAAAATTTTTT 19936 29 100.0 35 ............................. CCAGGAGAAAGTCAATTAATAATAAGGTCTGATGA 20000 29 100.0 36 ............................. TATGCTGATCCCCATGGATTTCCTTCTGCCTTATCT 20065 29 100.0 36 ............................. TGTAATACATGATATCCAGGAACTACTCCACAATTC 20130 29 100.0 37 ............................. TTCTCGAACTCTCTATTCCTCCCCAAGCACCTCTCAT 20196 29 100.0 36 ............................. TACCAACAGCCTCAACATTCTTAGGACTAATTAACA 20261 29 100.0 36 ............................. GGAAGTCCGAAGAATCCAAAAATACCGTACAAATGT 20326 29 100.0 37 ............................. AATTAGATAATATGTGCATATGCCACGCACCTCTTTT 20392 29 100.0 36 ............................. TACTTTATCCTCAAAGTATTCCTGGTACTTATCACA 20457 29 100.0 36 ............................. TAGTTTGGTTAGGAATACTAAAGATGGTGTAAGTGG 20522 29 100.0 36 ............................. ATTTCATAGGCTTGGTAACGCTTTAATATATCTGCT 20587 29 100.0 36 ............................. ATTCCAGGAATAGAACCACTCTCACTATATTGCCAC 20652 29 100.0 37 ............................. AGGAAAAACTGATGCAATAGAAAATTATCAATTTATT 20718 29 100.0 36 ............................. TAAGCATTATTTACTGTTTTAAAATTACCAGTAAAA 20783 29 100.0 37 ............................. AGTTGCATGGTCAACTATCCTTGGAAGTCATGAAGCA 20849 29 100.0 36 ............................. GGTAAAAGATTCATGGAACACATAGCTATCGAATTA 20914 29 100.0 38 ............................. TGAAAGATATGAGTTTAATAATGAAAGAAGCACATAGA 20981 29 100.0 36 ............................. GTAGACGTTACTGTTGCTCTTTCTTCTTCTGTTAAA 21046 29 100.0 38 ............................. TTACAAAATAAAAAAGCACCAGGAACTTTAGTTAATTC 21113 29 100.0 37 ............................. AACTTGATAATAATGGCGTTGAAAAAGGTGTTGGCGA 21179 29 100.0 36 ............................. TTGTCATTTAAAACACCATCCTTGACACTATTATAA 21244 29 100.0 36 ............................. TTGAACCACTAACATCTGGAATACTAGGATTAAAAA 21309 29 100.0 36 ............................. ATTTATAAAACTCTTGTATAACACCACCATTGAAAG 21374 29 100.0 36 ............................. GTTGATAAACCAGTTGAAAATATATGGGATAAAATA 21439 29 100.0 36 ............................. ATTAAAATACTTATTACTTCTGCATTTTTAACATAG 21504 29 100.0 36 ............................. AGATAACTGAATCCCACTCCACATAACAACACTACC 21569 29 100.0 37 ............................. TTATTTAAGCAATTTGAAGAAGTTTTAAATAAGAATT 21635 29 100.0 36 ............................. AGATAATTTCGATGTTTATGTAAATGAACGTATTGG 21700 29 100.0 36 ............................. TGAAAATATTTAATAATGTTTTTTCTTTTTCATTTA 21765 29 100.0 36 ............................. TTTTCCATTACCTTTACGATTTTGAGTTAAAAGAGT 21830 29 100.0 36 ............................. TGGTCGTTACCTTTGACCTTAGGTTTTTTATTAGTC 21895 29 100.0 36 ............................. ATATGGGAAAATTTCTATATTCATGATGATGCAGGT 21960 29 100.0 37 ............................. GTTGTATAAATGGGTATGATGCGAAGCATATGTATTA 22026 29 100.0 36 ............................. GAAGTATCAGTTTGAACACTACTAAATAAAGAATAA 22091 29 100.0 37 ............................. TTAAAAGCAGAATCCATAGCAGAACTTACATTTGAAA 22157 29 100.0 37 ............................. CAAGGTACTGATTTTTATTCTTTTTGGGGAGATAGAG 22223 29 100.0 36 ............................. AAGAATAGTTATTTTTATTTTCGTTTTCATGATAAG 22288 29 100.0 36 ............................. ACTGCACATGACTTTTTAGATAAAGAGCTTGAGCAA 22353 29 100.0 37 ............................. GGGAAAGTTTTATAGAATGGAAGGATAATTTAATAGC 22419 29 100.0 36 ............................. AAGAAGATTTTAAAACAGAATTATGTTGTTAAAGGA 22484 29 100.0 36 ............................. ACAAAATATTCTGATGAATAAGACATATCTCCTTGA 22549 29 100.0 36 ............................. GAAAGATTACCAGTCAGTAGGAGCTATCATTTGTGG 22614 29 100.0 36 ............................. ATAGTAAACAGCCATTTCAGCACTCTATCATACTTA 22679 29 100.0 37 ............................. GTTAAACCTTTCTCGCCTTTAGCTCCAGGTTCGCCTT 22745 29 100.0 36 ............................. TGGGTTAGAAGGTTTAGATCAGGCTAGTAAAGAAGC 22810 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGTAAGAACAGGAAGG 22875 29 100.0 38 ............................. TTCATCTTTGCAGTTTGAGTTTTAATCTTATCTTGTTC 22942 29 100.0 36 ............................. TATTACATGAGATGGTACATTTATATCATAATGTTA 23007 29 100.0 37 ............................. TTGCTTTTTAAGACACACTCTAAATATGTGCCTTCAT 23073 29 86.2 0 .................GAA....C.... | T [23100] ========== ====== ====== ====== ============================= ====================================== ================== 58 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //