Array 1 27642-28799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADICF010000002.1 Staphylococcus haemolyticus strain GDY8P50P 50P_BDMS192009081-1a_1.clean_(paired)_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27642 36 100.0 30 .................................... AATTCAATCGTTTATACACAAAAAGTGACC 27708 36 100.0 30 .................................... ATTGCCGGCTCTAAGTAGCCACGTTCTGCA 27774 36 100.0 30 .................................... AGCGAATGCTAAAAGCATAACTACTTCAAA 27840 36 100.0 30 .................................... TGAAACGTAAGCATAAATTATTTAGAAAAG 27906 36 100.0 31 .................................... ATTTGGTCAAAGTCTGTAAAATCACCCGCTT 27973 36 100.0 30 .................................... GTTTACTTAAACAAAGACAACAAGCTATCG 28039 36 100.0 30 .................................... ATGAGGTTGAAGGATATTACAAAGAATTAG 28105 36 100.0 29 .................................... CGTTAGTTGCAGGTATCATCTACCTGTGG 28170 36 100.0 30 .................................... GGTTATCCCATTCAATTACTGCGATTGGTC 28236 36 100.0 30 .................................... AGAAACAGAATGGTTACCAGTACTAGACTT 28302 36 100.0 30 .................................... ATTGAAGGTGGAGAAGCTGGAACATACCTC 28368 36 100.0 30 .................................... GTGCAAACTCATTTTTTTTGATATCACTTT 28434 36 100.0 30 .................................... TTCTTCTCCAGCTTTGATTTGTCTTACCAT 28500 36 100.0 30 .................................... TTGAACTGCATAAACGCTACCAACGTTTTT 28566 36 94.4 30 ...............G..................G. ATGTGATTTACCACTAGAGCCACCTCCATA 28632 36 100.0 30 .................................... ATAAAGGTAAAGTAACAGCTGGTGCGTTTG 28698 36 100.0 30 .................................... AAATCGACAATGTAAGCTATGACGATATAC 28764 36 86.1 0 ........G......G......A...........CG | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.9 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GATGCAAACATAATTGTATTAACAGGATCATTACATTTTCTATCCGAAGAGTGGAAATACAATAACTATATAAGAGATGGTGAGCAAAAAAACACATCTGAATTTCTGGAAGAATTAGAGTGGAATGCGCCACTTAATTTTGATAAGAGGGAACTAGAAGAAAGTTTGAATCGATTCATTTTAACTTATCAAGATAAATTAGAATTAAATCCTATAATATCTAATTATCAAATAGCACAAATTATGTTATTTAGTGCTATTGACATATATGTTGGCGTTTCATATATGCAACATTGTAATCATAAATTTGAATTGAAAATTAAAAATGAATTACTGCCTAAAAGCATCAATAAATATTTAAACCAACAATCGTTGAATTAATTACTTTGCTATAATTAACATAATAATCTATTATTATCTTAGTGAATGAGTTTAGCTAACTTGTTCACTGAGATACCTTTTTATAAACTAATTCTTTTAGCGATTTTATATTGCTAGAG # Right flank : GTTACATTGATGCTACACCGCAAGATTGAAGTTTTAATACGCTAGTACTTCAGTCACAACTATTTTAAATAGCGATTATTAAGTGCTATTCCTTTCAAATGATTTGATTAAAGTGATTATCTCTATAATTACGCCGATCCATTATTCTTTTCAAATAATCCATAATATTGAGATCAATTATTTGGGGAAGAATGTAGAAATATTTAATATTAATTAAAATAGTAGTTGACTAACATGCTAAGGTGGAAATATAATAAATGTAAGGAACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTAAAACAAGACTTTATGTCGTGTTTATCCCATTAATTTATTAATGGGATTTTTTCTTTATAATTAGACAAATCGCCAACGATGATGACTATCGTTGGCGATTATTTTTTCATACTATTGATTACACATTCTCATCTGTAATTTGGCCGAGCCAATAACTGCCGGCAAAACCGACGATTAATGTGATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //