Array 1 6556-6258 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQO01000015.1 Neobittarella massiliensis strain Marseille-P4047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6555 32 100.0 34 ................................ GCCACACGGCCCGCATTTATCTACTAGATCCAAT 6489 32 100.0 35 ................................ TATATGCCGACCCGTCGGCGGGTTGATCTAACGAA 6422 32 100.0 34 ................................ TTCCGCATTGAGCACACCTTAGTATACCAGCGAG 6356 32 100.0 35 ................................ ACCAGGCTTCGGACGGTGTTGTAGACGGTGGTGAG 6289 32 75.0 0 ...................A.C...AAAG.GG | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.0 35 GTCGCTCCCCCCGCGGGAGCGTGGATTGAAAT # Left flank : ATTTTTGTGGAAATAGGGGAGGGGTGAGACCGTGTTGGTGCTCATTGCATACGACGTCAACACCGAGATGCCGCAGGGGCGCGCTCGGCTGCGCAAAGTGGCCAAGCAGTGCGTCAATTACGGGCAGCGGGTGCAAAACTCGCTGTTCGAGTGTATCCTCGATGCCGCCCAGCTAAAAAAGGTGCAGCACCTGCTCTTGCAACTCATCGATCCGGAAAAAGACAGCCTGCGATTTTATTACCTGGGCAATCACTACCAGGCCAAAGTGGAGCACTTCGGCGCCAAGCAGACCTACCAGGCTGAAGGCTTGCTCATGGTGTGACGCCGTGGTGCGAGGTGTAAGTGAACAGAAAAGCTCTGGCATGTTCGCACCGCAGTTGTGTACAGATCGGCCGCTGATTTGACATGGCTGGCCTATCTAGCTGCACATGAGGGGAGCCCATTCGCCATAAACAGAGAAAATGCACGGATCGTACAGCGGCATTTTGTCTATAACTGCC # Right flank : TCTTCCTTGTGCGTGCACAAAGAAGACCTCTTTACTATTTTTACCTTTGCTTATCTTATTGCTTGTCTATCCAAACACAGCCGTTTGTCTAAACGCATTTTTCCGCCACTGCCACGGCCAGCGTCCGGTCGGCCAGTTCCTCCAGCTCCATCAGGTGGTAACCGTCTACCGAGCTGGCCAGCTTGTACCCAAAGCAGTCCCCCCAGTAAGCGGGGATACCTGCACTGCCCAGCATAGAACCCATGATGGCCCCCACCACCGCCCCGTTAGAGTCGGTGTCCATAGCCGCCTGTACACACAGGCCCAGCGCCTTGGCAAAGTCGCCCGCACCGTGCAGCAGCGACAGCACCACGATCACCGCGTTGGGGATGGTATGGCACCAGTCGAACATGTCGTTTTCGTCGTACCGGCCGTGCAGCTTTTGCACCGCCTGCTCGTAGGTGACGCCAGCGTCAAAATCAGATATGGTGTCCCGCACCGCCTCGGCCAGCCGTGAATGT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 80679-80373 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQO01000005.1 Neobittarella massiliensis strain Marseille-P4047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 80678 33 100.0 35 ................................. GCCATATGGCTCACGCTTATCAATGTTGGAAAGTA 80610 33 100.0 37 ................................. GCTTTCATCCTCGAACGGCTCGCTTTTGCTAGGAGCG 80540 33 100.0 35 ................................. GGCTGGGACTATGACCGTATGCCGGATAGCCTGCG 80472 33 100.0 35 ................................. TTCTGAAACTTCTACGTAAGTATCTGGCGCGAAGT 80404 32 93.9 0 ...........................-....G | ========== ====== ====== ====== ================================= ===================================== ================== 5 33 98.8 36 GTCACCACCCACGCGGGTGGTGTGGATTGAAAT # Left flank : GCCGCAGTATACTGAGGTAAAAATACGGACAAGTGTTAGGGGGTAAAGGTATGCGCATATTAGAAAAATTGCCCAATATTGGGCCGGAGGTGGCGCGGCAGCTGGAGCAGGTGGGGGTGACCGAGGCGGAGCAGCTGCGGCAGCTGGGCAGCAGGGAGGCTTGGCTACGGATACAGGCGATAGACCCATCGGCCTGTATCCACCGCCTGTATGGGCTGGAGGGAGCGGTGCGCGGAGTGAAAAAAAGCATGCTGCCACCGGAAGTAAAAGCAGAGCTGAAAGATTTTTACAGTGCACACAAGCTGTGAGCGCACAGCAGTGCACCGGAGTGCGAAGTACAAGCGCCCAGGGAATACCCGTGTCTTTCGCACCGGGTACTGGAGAGGGTTATTCGCCTATTTAAGAAATGGCCGGACTTGATACGGGGGGTACTGGCATACAAGCTAGATAAGGTGTATGATAAAGACAAGTGTTAGGGCCTGTTTTTGTAAGAGATTGCC # Right flank : CATATTGTAGGCACAAATTAGATTTGAACCGGCTGTTGACCGTAGACAGAGAGGACGCATAGGTGGGGCCACTCAAAAGGGACACGATAAAGACTGATTGGCGCCCCAGTTGTTGGCGGGTAAAGATGCGATGATCGCTTTACTCTAATCTGGATCATACTTTTAATGCGTGCAAAACAGGAGACTGGACAGCTGCTTAATGGATGGGGGGACATGGTGAAGATACCATTTAGCAAAGAGCAACTGACGTTTTTGAAAAGTGTACCGCTACCGTTTGACCCATCGACTGACTTGACGGATGAGCAGATAGAGAGATTGGTCGATGCCTTAGAAGATCACATTGCGTACCATGGGATGAACGAGGCCGGTACGGGAGAAAGTGAGATCGGCACTTGTTGTGCTGATCTGCTCACATTTTTAGCACCATATGCATAATGAAACGACAAGTCAATAGCAAATATGGTCTCTACAGTAAAGATAGGGGCCTTTTTGCTGTACAA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACGCGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 100718-101489 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQO01000003.1 Neobittarella massiliensis strain Marseille-P4047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 100718 33 100.0 35 ................................. CTGGTTTGAGTGGTGGGAAAAGGGTAACTATCGTG 100786 33 100.0 35 ................................. CTGGTTTGAGTGGTGGGAAAAGGGTAACTATCGTG 100854 33 100.0 35 ................................. AGGATATCGGCATATCTGGCTATAGCTGTATCGTC 100922 33 100.0 34 ................................. ACCATCCGTTTGCAAAACCATTACAGCGCCCCAT 100989 33 100.0 34 ................................. ATAGCACCCTCGACCACGGAAATAACAGCGTTAA 101056 33 100.0 33 ................................. GATAACGATAGTATTTTCGGTGTCACCCTCCCA 101122 33 100.0 35 ................................. AACAAGGACCAGGCCCTCATCCGCAGCTTATCGGC 101190 33 100.0 34 ................................. ACTCACTCACTGACGCTTAAGGTGGGCAGCACCA 101257 33 100.0 34 ................................. ATCACAAATTTGGGTATGTACAACGAGGGTCGTC 101324 33 100.0 34 ................................. ATCGAAGAAAGATGCTGCCGCATCGGTATCGGCC 101391 33 97.0 34 .....................A........... TGGGAGAACTCCGAGAAGATGCTGTACACTTCGC 101458 32 75.8 0 ...G...T....A..........A.-G.A...C | ========== ====== ====== ====== ================================= =================================== ================== 12 33 97.7 34 GTCACCACCCACCCGGGTGGTGTGGATTGAAAT # Left flank : ACGCTCTTAAGTGTTTAGAAGATGAGCCTGAGGAGTAAATAAAAAGCCTCCATCTGTCATTTCAAATAGTTGGGAGTTTTTTGTTCACATTGCAGTAATATTTATTGAATACACTTTATGTGTACATATTTTCCGTAAGAAAGGAGATGAGCCCATGTCAACCGTTGAACAGCTATCTAGAATGCTTAGTGAGTACAGGAGTGCCCACAAATTAAGTCAGGAAGAGATGGCAAAATTATGCGGCATACCCGTAGAGTATTATCGGAGGGTAGAAATGCCCAGTAAAATCTAAAGTGGGATAGTCTCTAGTTGCTGTCTAACTAGAGACTATTTTACTGGTGCGAAGTATAAGCGCACAGAGAATGCCTATTATGTTCGCACCTGTGTTTTATCTCTTTTGCCGAGAAGATCTACTGTATGAGCAATGGATATGTTGACATCTGACAGCAATATAGCTACAATAAATACAAGCAATCTCCTATCTTTTGGTAGTGATTGCC # Right flank : CCGGAAATTAAGAATAACCCTGGCTATACTTAGTCAGGGTTATTCTTATACTTATCATGCGGGCTTAATATCTGAAAATCAATAATGTTAGAGAGGATTATCCATGCGCAAAGTGATCGTGCCCGCTGTCGTCCGCTATGATACTGAGAGTAACATGGCCTCGATAAAATAACCCACTTTACTGCCAAAATAGCGATTTTAGATAGCTAAACAGGAAAACAGAAAATGTTAATATTTCGCGTAGATAAGCCGTTTTTTTAAGTTTCTACGTAAGTGGAAAACCAGGTGTTTTGAGTTCAAGTCCGGTCAGCGGCACCAACAAGGACCGCATGGATAAGCCATCCATGTGATTCTTGTTAAAGAGGTCTAGATATGGGTGGAGTGGGCCAGGTGGCAAAATTGGCGGACTTTGCCGATATCTTTGTGCAGAAGTTTGCCGCTTGCATTTTTTACACTGGTCTTGGTGAGCGAGTCGACGCCGAAGGGGTGTACGGTGTGGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACCCGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 108272-107359 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQO01000003.1 Neobittarella massiliensis strain Marseille-P4047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 108271 33 100.0 35 ................................. ACTCGTACTGTACCGTCATTTTGACTATTGGTGTC 108203 33 100.0 33 ................................. ATGTTGACGATGATAAAGCCTATGTCTACACCG 108137 33 100.0 34 ................................. AAAAATGATTTTGGATTTGTGATTGATCGACTAT 108070 33 100.0 35 ................................. ATATATTGGCGGGCCGTTTCAGTGCTTTTTACGCG 108002 33 100.0 34 ................................. ATCTGACAAGATCATCAATAGATCACGCTGCGCG 107935 33 100.0 35 ................................. TGAGCCGTTCCGGGTCGCCGTATACGCGGGGGTTA 107867 33 100.0 36 ................................. CCTTTTCGGCGGCGTAGTCTTTGAGCTGTTGCACGG 107798 33 100.0 34 ................................. TTCTGTCGGCGCTTGCTCGCCGCCGGCGCCCATG 107731 33 100.0 35 ................................. GGCTGTATAGTGGTACACCGGGCAGCGGCAAGAGT 107663 33 100.0 37 ................................. GTTGAACGGCATATCTGCGGTGCCCGCCTCGGTCTTG 107593 33 100.0 35 ................................. CTTGTGATCTCGACTATCTCCGCCATTGTGCCGGG 107525 33 100.0 34 ................................. CGTGATGCTGTATGCTCTTGTCATGATGCAACCG 107458 33 100.0 34 ................................. AACTATGCGGGCGATATGACTTTACAGGAGCGTA 107391 33 87.9 0 .......................A.C.....GC | ========== ====== ====== ====== ================================= ===================================== ================== 14 33 99.1 35 GTCACCACCCACACGGGTGGTGTGGATTGAAAT # Left flank : CAAGTGCCAAAATGGCTTGCAAAATAGCATTCGCACTGTCGAATAGTCCCTGCAGCACGCATATTTCGTGATAAAGCTCATCAATCGCATTGTTCAAACAGTCAAACTCTTGTAGAGCGGGCTGTTTTTCAAACCTCATATTTTGAGTGCGAAATATCATTAGAGCGTTACAAAAGATTGAGTTGGGCAAGTCAAATCCAGTCCTGATAACAGCTGTGCACATAGCCGCATAGCCCGGTACTTGGATATGGATCTGAATGCTCTCAGGTATTCCGAGGACGAGCCTGGCGAGTAAGGTGCAATAGCCCTCAACCTAAGTGATGGCTACTATTGTGCTGGTGCGAAGTATAAGCACGCAGAGAATACCTGCTATGTTCGCACCGGTATTCTATCTCTTCTGGCGTGAAGATCTGCTGTATGAGCAATGGATATGTTGACACCAGACAGCAATATAGCTACAATAAATATAAGCAACTACCTATTTTTTGGTAGTGATTGCA # Right flank : ATACTCCCGTCAAAGCCTTTCGGCAGCCGCCCCCGTCAACGTTTAACATGAACAGCGCATAAATGAGCCGCCGACAAGTACACCTGTCCCTGCTGATATGCCAGACAAGAGGTCAAAAGCATTCGCTACCATCGCCCTTACATAGTCTGGTTTCCCTTATATCTGCCTATATCTTTTTATATCGCCACAGGAATTTGGGGTACTATATAGGCACAATGTTGTTATGCGTGTCCTAATCGGCGGGAAAAACCTTTATTGGCGATCGTTTTCACCGTTCAAGGCTTTTCAATAGCAAAATTTCTAATACTATTTTTTAGCCTTGATTATCATGGTCCCACAGTTTTCATAAAGTACCTTTATGTCGTTGAATCCGGCATTTTCCATCAGTTCTATTTGATGTTCGAGCGTCAACGGGATATCGATATGTATAAAAACATCATCAGGTATGTTGTTTACTCTGCGTTTATACGCACACTGTTCAAGGCAAAGCGTTTCTTCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACACGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 3 198176-198882 **** Predicted by CRISPRDetect 2.4 *** >NZ_OKQO01000003.1 Neobittarella massiliensis strain Marseille-P4047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 198176 33 100.0 35 ................................. CTTAGAAGCATTTACCCGAATGGCTGGGTCGTTTT 198244 33 100.0 33 ................................. ACCGGTACACTCGGATAATCGAAAAAATCCGTG 198310 33 100.0 34 ................................. GGCTACATAGTAGGCCAACTGGCTGCGGTAGTAT 198377 33 100.0 35 ................................. GCCAGTACATAGGGGACGATGAGTATGAGAGAAGT 198445 33 100.0 33 ................................. ACCACTGTCGTACCCATGCCGCAACCAGTGTTC 198511 33 100.0 34 ................................. CTCGCGACCCTGTTTTAAAAAGCATAGCAGCCAC 198578 33 100.0 35 ................................. AATGTTAATGAAATGTGGCTACGGACCGGAATGGG 198646 33 100.0 35 ................................. AAGACAAATTGTCTTATTATTTAGACAGCAAGACA 198714 33 100.0 34 ................................. AATTTCTACGATTCGTACACCCTGCTTATGAGCG 198781 33 100.0 35 ................................. ACTAAATCCACCCCCTTGATCGTCATAATTCCCGT 198849 33 97.0 0 .............................T... | T [198875] ========== ====== ====== ====== ================================= =================================== ================== 11 33 99.7 34 GTCACCACCCGTGTGGGTGGTGTGGATTGAAAT # Left flank : TGAAACTCTGTTTTTGGTAGATGCCGATCAAGAAGTACACCAAAACTGCTTATCATCCCCCTTAAATAACGAGTCTCTACCATTGATCTGAACGCTCTCGGGTATTTAGAGAACGATTTCAGGGAGTAAACCAAAAGCTCCGGCTGTCATTGAGAAAAGAGGTGGGCCCATGTCAACGACTAAAGAGCTATCTAAAATGCTTAGCGAGTACAGGAGCGCCCACGATTTAAGTCAGGTAGAGGTGGCAAAATTATGCGGCATATCTGCAGAGTAGTATCAGAGGATAGAAATACCCAGTAAAATCTAAAGTGGAATAGTCTCTGATTGCTGTTTTGCTGGTGCGAAGTATAAGCACACAGAGAATACCTGTTATGTTCGCACCGGTGTTTTACCTGTTTTGCCGCGCAGATCTACTGCATGGGTAATGGATATGTTGACAACATACGGCGATATGGCTACAATAAATATAAGCAGTCGGCTATCTTTTGGCAGTGATTGCT # Right flank : TATGTGTGTTATATCCACGCTTGTCAAGAGGTCTTGTCAAAGTGATGTTGCTCTGACTGGTTTTGAGCGTATAGAGATCGCTTTGGTAAGCTGTTTTTAAAGTGGGGCTTGTCTGTGTATTCATCATTGCTCGGGGCCAGATCCTCTACATTTCACTGGGAATAACCGCATAGGCGATGGCCTATGCGGCCTTTTGCTTTTATCGGGACTTTTTCACCTGCTATAAAAGAGCAGTCTGCGGTCAGACTGCTCTTTTTTGTGGCGCTCGATACAGCAGGATGTTCGCGGTGGGCGGTGGGAAGGTGAGGCAGGTGAGACGGGTGTGCACAAAATGTAGAGGAGATGGACGGGGGTGGGCGGCATGCTGCCGGCTGGTGGGGCGACCGGGCGTACGGGGGATGAGATATGGGAATGATCGGCTTTGCCCACTGTATGAGTTGAGCCCGGGAGCTGGGGGTGGTGGAGGGGCGGCAAAAACCCGAAAAGTATGCTTTACAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCGTGTGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //