Array 1 48620-49367 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUP01000052.1 Providencia alcalifaciens strain wls1912 790, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48620 28 100.0 32 ............................ ACAAAACGCCATGGTTTTCCCTTGACGTAAAC 48680 28 100.0 32 ............................ AGAATGAATCTTTGTTCGCCCATTTGAACATT 48740 28 100.0 32 ............................ GTTATGGGGATTCCCATATCGCTAATTTAATC 48800 28 96.4 32 .............A.............. TAACAATCACCGATGTAATGGCTTCGCTTGGT 48860 28 100.0 32 ............................ AACAAAACAACGGAATTGTAGATATGTGCAAA 48920 28 100.0 32 ............................ GAGCATGTTTAAGTTGACGTTAGAACGTGTAA 48980 28 100.0 32 ............................ TAGCCGAAATTATCTTGTAAAAGGGTTAATCA 49040 28 100.0 32 ............................ ATCAGCTGAATGACTTGGCGAACGCGGAAGTA 49100 28 96.4 32 .................T.......... AAAGTAACGTAGTGATACGTGATGATGGTTGC 49160 28 100.0 32 ............................ TCGATGAGGGCGACGATGATTTTGATAAATCC 49220 28 96.4 32 .............T.............. AAGTGCCTGCAATAAGGTGGTATCAAATGGCT 49280 28 96.4 32 ...............A............ ACTATCCATGTGAATGATTGCTCTTGTTCCGC 49340 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GCGGATACACGCACAATTCAGAACGAAACCCGTAAGACTGAGTTGTTACAGACTAACTGGACTGGTGCAACGACGGATTACTATAAAGAGAAGGCAATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTCAACAGTATGTCGTTATTTGGCGGACGTTGATTGATTTTTACCGCACCCTTTGGCAGTGGCATGTGTACAGGGTGCGGATTTTTCATTCTTCTCGTTATGTTCGTGCTATTTCTTCCTCGTTATTTTCTCGCCCTGTATATTTCTAAGCACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATGGTTTATTGTATCGATTTGATGATGTATTTGACCTTTATTTTTTGTTCTTTAAAAAATCGCCTGATAAACAACAGGTTATTGAACCACCTAAAATAAAGGGTATTTTCAGCCTTTTGGTGCTAACAGTCTGTTGTGATTTGTTTTATTCCTGATAATTTATA # Right flank : ATCGTTAAGCCACTATTATTTTTCTTAAACTATTAACCACAAGTTTATAGAGGGGAAACTCATCAAGGTAGACATTACAAGGATTGCGAAGTGCCTCGCAAAATGAATCTTCAATTTTTTTAAAGCTTGTAATGTCATTGCTGAGAGACTTAAATGAAATAAATAATTCAAAAAAATTATAGTATTAAGCAAAGGAATATTGACATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGCGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAACACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGCGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGTGGAACACCGCTTTATATGGCAACAGAAATCGAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58074-58521 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUP01000052.1 Providencia alcalifaciens strain wls1912 790, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58074 28 100.0 32 ............................ TTTAGCGCCAGAAACTGGAGGGTCAAACCTCA 58134 28 100.0 32 ............................ TCAAAGAAGTTCTAGCAACAAACCAACCACAC 58194 28 100.0 32 ............................ AAAGACAAGTGCTGTCCTAGGTGTGAATGTAA 58254 28 100.0 32 ............................ AAGTTGATGAGAACGAAGCCTATCTGATTGGT 58314 28 100.0 32 ............................ TATGTGATTTAACCAAAGGATATAACCATTAC 58374 28 100.0 32 ............................ CAGAGAAATACGCACTGAAATTATTAAGCCTG 58434 28 100.0 32 ............................ GAAACAGTTTTAGGAAGTGACGCAAAAGTCAC 58494 28 89.3 0 .......A...C.....T.......... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGAAATCGATTCAAGCGGTTCCCTCTAATGCTCGACCAGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCAGAAGAAAGCGGCACTTTGGGCTAAAAAATCAGGTCGAACACTGGGTGAATGCTTAGCGGATTTAGAGAAATCCCGCCCAACTAAGCGTAGTTTACTGCCTTTTATTTGGGTAGAAAGCTTGCATGGTAAGAGTGAGAAAAGGGGAAGTCGTCCATTCCCACTTTTTATTCAGTGTGTTGAAGCGGAACACGTCATTGAGGGGCGTTTTAATTGTTATGGGCTTAGCCAAGTCGTTGAACGTAATAAAATACTGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCGGTGAAATAAAGGGTATTTTATTAAGAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : ATTTTAGGTCAATAACGGAAGCATCGGTGCATGTTCACTGCCCCACTGGTAGCTAAAATATCGGTCTCATCTATTAACTTTTATTATTTATGCCGTTGGGTGATTTGTACTAAATTTGGCGGCTGTTATTCTACAAAATAACAGAATAGTGACTGTTGTAAGATAGCTTAGAAATGAACGATAGAACGGGTCTAGATTACTGCCATACAGGCAGCTTTACCGAAACCTGAACAATAGAATGGGTATAATACTGTGTTACCTGACGACAAACATCCTAGACCAACAGATTAATTGGAGCGCACCATGCAGTACGAAATTATGATTAAGATCCTGTGTATGACCTTAATCTTCAAAGTGACAAAATTATCGGGCTCACTCAAACCCACAAGTTAAATATCAGGGATAACTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGGATAGAAATAATCAGACCTAACATGCTGATACCAATCGTTAATGTTAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //