Array 1 1750634-1749742 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENE01000001.1 Prevotella intermedia strain KCOM 1945 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1750633 47 100.0 30 ............................................... CCTAAGCAGTGGGGCACTCTTTCCTGTTCA 1750556 47 100.0 30 ............................................... ACTGGAAATGAGAATGTCTATATAAAAATA 1750479 47 100.0 30 ............................................... ACTTGAAGCTGACCTTCAGGCAGCGGAAGC 1750402 47 100.0 29 ............................................... CTTTGCTATTAAATTTCATTCAAGAAGTC 1750326 47 100.0 30 ............................................... CGACACCTATTCGTTTACATTGAAAAACAT 1750249 47 100.0 29 ............................................... CGTTCTAAATGTTCTAATAATTCGTTACC 1750173 47 100.0 30 ............................................... TTTAGTCTTTCTCTGACCTCTTTTTTGGTA 1750096 47 100.0 30 ............................................... CTATTATAAAACAACATTCAGTCTTGGGGT 1750019 47 100.0 30 ............................................... GTACTCGTCTAACACAAAAGCGCTGCAATT 1749942 47 100.0 30 ............................................... AAGCACACCCACACATAGAAATACTGATGT 1749865 47 100.0 30 ............................................... ACTCTGCCTCAACACTCGCCAAATCTCCTT 1749788 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : GTGTTTTATTTTCAGTGGTTGCATACCTTCATTTGTTAAAGCCTGAATATTCGTTAAAACGACTCCGAAATTGTTAAATTTCAAAGCCCCAACTTCCGAATTATGGGCACTTTTCTGCACTTTAAATTATTTATTTGCAAATAACGCCATTATTTGCGTGCTATCGTAAGTGCTTCGTTCATAGCTTCTTGCAAGCTTATAGGGTAGTGTTGTGCAACGGAATCGCACCTTTTGTGTTGTAAAACGAATACTTTTGTTCGCATATAGGCTATATTTTGCGCTCCATCACCATCTTTTCGCTCTGCAAAAGAGCCGTTCTTGCAATCCAAAAGAGCTGCTTTTGCACGGTAAAACCTATTGTTTTGCATTGCAAAAGCGGCTCTTTTACTTTTCGACCCCTATTTTCCTGCTCTCTTTTTCTCTATTTTCTCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : TCAAATGGATTAAAGTGATGAACATCAGTGTTGTTACGAAAGATTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGCTCTAATTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCAGGAATAAAGGTGGAAACTCTTTTAATGTGTACTTCCATATTTTCTTTACTACCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCTGGATAAACCAATCTTCTTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 280385-279757 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENE01000002.1 Prevotella intermedia strain KCOM 1945 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 280384 36 100.0 30 .................................... CCATAGAAGGAATGTTCTCATGAGCAAAAG 280318 36 100.0 30 .................................... GACTTAGAAACATTCCAAAATAAATTAAGA 280252 36 100.0 29 .................................... AGTAAATGAGGCACTCCTCATTTTCAATG 280187 36 100.0 30 .................................... TAATTGTTTTCTTTAATTTTTTCATCTCAA 280121 36 100.0 30 .................................... GAAGTTCGAAGTATAGCAATGGTGCTATAA 280055 36 94.4 29 .............G..G................... GAATTCCCACCTAAAATGAAAAAGCTAGT 279990 36 97.2 30 ................G................... CATTTTTTATGTTTTTAAAATGTTAATTAT 279924 36 94.4 30 .............G..G................... GTTGAAAGAATTCAACAGTAACGTTTAGAA 279858 36 94.4 30 .............G..G................... TATTTTCTTCAAAATTTCCATTGCCGTTGT 279792 36 88.9 0 .............G..G.........C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.9 30 GTTGCATCTGCCTACTATTTGCAAGGTAAAAACAAC # Left flank : TGAGAATATTGAGCGTGCAAAGTACGAAGCCGTACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATAATGGTGTGGGAGCAGCCTAAGGGTGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGTTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCATAAAATGGGTGGTGGAAAGAAAGGAACAAAACATATAAGATTCAGACAGTTAGGTTAGGTGTGT # Right flank : TTATCAACAAGCAAGGGAATGGAATTAGGGGAAGTAAAAATGGAAGGGGAAACACGCCTTTTAAGGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCGAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATAGAATTATCTTTACAAAACAGGGGTGGTTTTACATCGTGGAAAGTGTAGAGGTTGTGGCGTGGGTTCGGGCGGCAGCAAAATGGTGGCTTTGCCGATAGTGCGACATCGGCAAGGGTGGTTGGGGCTTCTGCATCGCTCGATGCGGTGGTTCGTTCGGTTCTGTTGGCTTCGGTTGGTTGCTCTTCGGCAGTTCACGAAGGGTGCTTCGTGTGGCAGGTTTTATGGTTTTTGGGGAACAAGA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTACTATTTGCAAGGTAAAAACAAC # Alternate repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //