Array 1 32511-33515 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXF01000078.1 Cronobacter sakazakii strain MOD1-Ls15g Lc15g_S12_L001_R2_001_trimmed_contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32511 29 100.0 32 ............................. CACACAAAAACACGCAGCAACAATATTTTCAA 32572 29 100.0 32 ............................. CACGACCGGCCGGGATCGTAACGGTTAAAGGC 32633 29 100.0 32 ............................. CGAGGCTTTGCGTCACTAAAAAAATTGGGGCT 32694 29 100.0 32 ............................. GTGGTGAAAACCTTTTTAATTGCCGTAGCGGC 32755 29 96.6 32 .......T..................... TCCACTTGAGAGCAGAGCCCGACGCCAGAAAT 32816 29 100.0 32 ............................. ATCATCGACAAACTCTTGCTGCTCTCCGATAA 32877 29 100.0 32 ............................. GCGGTTGCACTCCACCACGAACCCCCCGAACC 32938 29 100.0 32 ............................. GCAACGAGAACAAAATTGATGGCGCGGTCGCG 32999 29 100.0 32 ............................. TCACCTCTCTCTTTTTTTTGAATAAAATCACC 33060 29 100.0 32 ............................. TTTCCGCCGGTCGCGGCGTCGTATACCGCAAA 33121 29 96.6 32 .C........................... CGAGGGGGCTGTCAAGGGGATTTATTGTGCTG 33182 29 96.6 32 .C........................... GCTGGGAAAGTGGGGTTGTCACAGCGTGTCAC 33243 29 96.6 32 .C........................... GGAAGCGCCGTGCGCTGTGCGATGGGAAGCGC 33304 29 96.6 32 .C........................... TTAGTTGACACGTATTTACCGGGCGTTATCGA 33365 29 100.0 32 ............................. GGTGCATCCGGCGGCAGCGGCTGGCGCATTCA 33426 29 96.6 32 .........................G... GCGGTGCCGCATGACCGACACAGCACAACTGA 33487 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCACGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTAGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTGAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCAATCAGTACAAAGAGTTACTTTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGGCAGCCGTAATAAACCGCCCAGGCTCTTCGCGTCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2319-5522 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXF01000115.1 Cronobacter sakazakii strain MOD1-Ls15g Lc15g_S12_L001_R2_001_trimmed_contig_115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2319 29 100.0 33 ............................. TCCACCTTGCTGCTTTTGCTGTGGCGGGCCTGC 2381 29 100.0 33 ............................. GAGAGACGCCACATGCGTGCCGCCGCAGCCATA 2443 29 100.0 32 ............................. ACGAGTTCGACGACATCATTGTTGAGCTGCCG 2504 29 100.0 32 ............................. CGATTGCAGCAAAAGAGCAGATTCGAGTCGCC 2565 29 100.0 32 ............................. CCTACCTTTAGAGCTTATAAGCAGCAGCGACC 2626 29 100.0 32 ............................. ATTTCGCCGGATCATTGGGAAACCGCCTCAAA 2687 29 100.0 32 ............................. CCGGTTTTCCCCGGCTCATTAATTTACGCTTC 2748 29 100.0 32 ............................. CGCCGCGTCCAGCTCTTCCTGGCGCGCATCCA 2809 29 100.0 32 ............................. GAGAAACTGGTCAATCAGCAACACACCAACGA 2870 29 100.0 32 ............................. CTAAAAGCTCTTTTTCCGCTCCATATTTCAAC G [2891] 2932 29 100.0 32 ............................. ATTAGCGAGACGTATCTCAACGGGCGCGGCAC 2993 29 100.0 32 ............................. CGGCCCCGAAGGGGTAACGCCCGGTGTAAAAT 3054 29 100.0 32 ............................. CGTATATGGACATGAATTAGGTGCTGATTATG 3115 29 100.0 32 ............................. CCGGTTTTTGCTTTTGTTGCCACTGTTGAAAC 3176 29 100.0 32 ............................. CTCCGCGTAATCCATCAACTGCTCGTGCCACT 3237 29 96.6 32 ............................C GCCTCCCATACCGGAATAAGCCGCACGATGGC 3298 29 100.0 32 ............................. AACCCGCCGGAAGTGGGAAAACTTTCGCTGCC 3359 29 100.0 32 ............................. ACGTGGTAATTACCCCGGCATTTAGCGGTGAC 3420 29 100.0 32 ............................. CGGCCACTCAGAACGAGTTCAACGCCGTCATA 3481 29 100.0 32 ............................. ATTCAACACAATCCGCCCCATCCGGGGCAAAT 3542 29 100.0 32 ............................. ATTCAACGCGCGTGCGCAGCTCAACAGCCGTC 3603 29 100.0 32 ............................. TGTCGACCCTGCAGTTCTTTACGATGCTTCGT 3664 29 100.0 32 ............................. TCGGCCTCGTTCTGCTGATAGAACGCCTCGGC 3725 29 100.0 32 ............................. TATTCTCATTGATCTCTTTTGAGTTCATCTTT 3786 29 100.0 32 ............................. TGGTCATTACGCTCTCCTTGTGGTGTCTGAGA 3847 29 100.0 32 ............................. GGCGGAGAATTTACATTTTTCAATAGCTGGTA 3908 29 100.0 32 ............................. TTTGCAATGATGTTTTTCAGGGCCTCTTTCTT 3969 29 100.0 32 ............................. ACGGCGGCGTTGTTGTGATTGCAGCGTTTGAT 4030 29 100.0 32 ............................. ATAATCGAATCCCCATGATGATGTTAGGTGGT 4091 29 100.0 32 ............................. CGTCTGACGCCGGGGCGTATCATCATGACCGA 4152 29 100.0 32 ............................. GCGATCATCAGGTAGAAATTCGTTGCAGAGAA 4213 29 100.0 32 ............................. CTCCTCAGATTAGGCCCGACGCCTTGCGGCGG 4274 29 96.6 32 ...................C......... GTTTTACCAACGCTGCCACTATAATTAATTAC 4335 29 100.0 32 ............................. TGCTGTTACCCCATACATTAGGGTTTGACGCC 4396 29 100.0 32 ............................. CGTTCAGCCGGAATAATTTTTGTTTCAGTGGT 4457 29 100.0 32 ............................. ATCCGGCTCACTGGCAAATCGTGGACACAGAC 4518 29 100.0 32 ............................. CACCCGAATGCGTTGTCTTTTGAGTTGAGGAC 4579 29 100.0 32 ............................. GTCGTCAGGGCTGTGCAGTCAGCGCTGCTAAT 4640 29 100.0 32 ............................. GGGTGAGGACGTTCAACCGAAGCATATAGGAG 4701 29 100.0 32 ............................. GCTATATCCACGCTGCGGCCAATAGCCATTTC 4762 29 100.0 32 ............................. ACCAGCCACCGTGTCACTACTGTGGAAGGTAT 4823 29 96.6 32 ............................T GATGCGCGCGCGCTGGGACGAACGCAGCGCCC 4884 29 100.0 32 ............................. GCCGATGAGGCCAACAAACAGGAGTGATCATG 4945 29 100.0 32 ............................. TCAGACGCGGGTACGGTCGTAGTGTTCTGCTC 5006 29 100.0 32 ............................. TTTTTAACTCATTTACAAGGTGGCTCTCAACC 5067 29 100.0 32 ............................. CCTGCCAAACCATGCAGGCTTCACCCTCCATG 5128 29 100.0 32 ............................. TTTTTAAGAGCGGGGCTAACCACAACGGCGTT 5189 29 100.0 32 ............................. GTTATCGGATTCAACCCTTCATCAGCAAGGTG 5250 29 100.0 32 ............................. CAGATTCCGTGACTTACATAATCCCCAGCCAC 5311 29 100.0 32 ............................. TGCCGATGGCGGTCTACTGCGCGCCGCTCGTT 5372 29 100.0 32 ............................. CGGGTGTTTATCCGCGTTCAGTCGGAATTTGA 5433 29 100.0 32 ............................. ACGTCTTCGACCCATTTATCCGTCGCGGCGCT 5494 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTTCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TATACGCCCCGAGTCCCGTTTTTGCGCCGTAGGTGTTCCCCGCGTGAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22509-22301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXF01000027.1 Cronobacter sakazakii strain MOD1-Ls15g Lc15g_S12_L001_R2_001_trimmed_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22508 28 100.0 32 ............................ TATTGCCGGTGGAACAATGACCGGGATGATAG 22448 28 100.0 32 ............................ TGCTGGCGCATCCGTTCGCTAAACTGCCTGTC 22388 28 96.4 32 .................G.......... TCCGGCCTCCGGCCTCCGCGCTCCGCTTGGCC 22328 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGGCGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69520-69064 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXF01000044.1 Cronobacter sakazakii strain MOD1-Ls15g Lc15g_S12_L001_R2_001_trimmed_contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69519 29 100.0 32 ............................. CGCGCCGGCGCTACCAGTTGTATTGCTTGCTG 69458 29 100.0 32 ............................. ATTAACGGACTGCAAACTAAACCGTTTTTAAC 69397 29 96.6 32 ............C................ AACGTGTAAATCAACTGGAGGCACGGGTCAAA 69336 29 100.0 32 ............................. AGACCAGACGCCGATACCAGCGAAGAAATGGC 69275 29 100.0 32 ............................. CCGCCATCATGCGGCTCACTTGATGCGGATGA 69214 29 96.6 32 ............C................ ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 69153 29 96.6 32 ............C................ GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 69092 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GCGTGAGCGGGGATAAACCGGCGAATCAAAAGGAAAAAAATATAACGAAAT # Right flank : TTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16002-16152 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXF01000038.1 Cronobacter sakazakii strain MOD1-Ls15g Lc15g_S12_L001_R2_001_trimmed_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================= ================== 16002 31 96.8 29 ............................G.. CTACGGCTCCCGCAATGGGCTTTGATGAT 16062 31 100.0 29 ............................... ACACAGCCCACGGAGCGGACGTTGACGGA 16122 31 96.8 0 ...........A................... | ========== ====== ====== ====== =============================== ============================= ================== 3 31 97.9 30 ATGTAGGGTGGGTAAGCGAAGCGCACCCACC # Left flank : AGGCGACGCGCGAGGCCGTTGAGGCTATTGCTGAAGCGGATTTGATTGTGATTGGCCCCGGCAGTTTTTATACCAGCCTGATGCCGCTGCTGCTGCTTGACGATCTCGCCAAAGCGCTGCGCCGCACGCCTGCGCCGATGGTTTACATCGGCAATTTAGGCCGCGAGTTAAGCCCGGCCGCTGCTGCGCTCAGGCTCGAAGAGAAGCTGGCGCTGATGGAAGCGCATATCGGGAAACGCGTGGTGGACGCCGTAGTCGTTGGCCCGAAGGTGGACGTGAGCGGCGCGCAGGACAGAATTGTGATTCAGGAACCGCTGGAAGCGAGCGATATTCCTTACCGCCACGACCGCCACCTGTTGCGCGCAGCGCTGGAAAAGGCGATTCAGGCGCTGGGGTAAGGGCTATGGGTGCAATGGGGTTACGGGGGGTGCGAGGGTGACGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGAT # Right flank : CACATCACAAACCATCCATTCGCAGCAAGAAGCACTTACGACGCGGCGATAAAAAGCTCGCGCAACTGATGAAGCTTATCGCGCAACTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGTTGCACCATCTGCGCCTCAAGCTGATGAATTTTCTGCTGCAACGCTTTCGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTGTTAAGCCCCTGCGGCACAATGCCGTGTTCTTCGTTATACGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCCTTGCCGTTCACGTTACGCGCCGCGCGGCCAATCGTCTGGATAAGCGAACGTTCGGAGCGCAGGAAGCCCTCTTTGTCGGCGTCGAGAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //