Array 1 908332-910017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044354.1 Limosilactobacillus fermentum strain 2760 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 908332 36 100.0 30 .................................... AGTTCTATAACGATTATGGCGTTCATTGGC 908398 36 100.0 30 .................................... TCGTGTCAGTGTCACGTTGCGGGTCAAAGT 908464 36 100.0 30 .................................... AGCGAAGCTAAGAAACTGGTAGCTAGATGC 908530 36 100.0 30 .................................... GATAGAATTTGTCCCTTTGGATAGTAATAT 908596 36 100.0 30 .................................... CGTGCCGCTAACGGTCGAAGCGGTCGATTG 908662 36 100.0 30 .................................... TTTAACTTTAAAGGCAATCACATTAAATCC 908728 36 100.0 30 .................................... TCGTTAAGTCAATATTTTTACGTTTTTTTC 908794 36 100.0 30 .................................... CCTGAACGATGGCACAACGACGGATGTTTA 908860 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 908926 36 100.0 30 .................................... ATCTTTAAATAACGGTCATCGCCCATATCA 908992 36 100.0 30 .................................... CAGTTTTACAATGACTACGGGATCCATTGG 909058 36 100.0 30 .................................... ACTTTTCTATTGATGAAGAAAAGTACTTAG 909124 36 100.0 30 .................................... CATTCTGGGCTAAGTTAGAAGCAAAGGTCC 909190 36 100.0 30 .................................... TACTTACAGTGCCTACGACCGGCGACTGGG 909256 36 100.0 30 .................................... CAGTACTTGCGACCGGCGACCCTCTTTGGC 909322 36 100.0 30 .................................... CATTCGTAAGATTATGATGCGTCAACGGCA 909388 36 100.0 30 .................................... GTGGTTTCATTACCAGAGAACGTCGTCCCG 909454 36 100.0 30 .................................... TAAAGAAATCGAAAAGTTAGACTACGAGCA 909520 36 100.0 30 .................................... ATCGTTGACCATAAGGCGTTAATTGCTCCC 909586 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 909652 36 100.0 30 .................................... TGCGAGGATAATGAATATCGTAATGTCCCA 909718 36 100.0 30 .................................... CAAGTAACTAGCAACTTATAAGTAGGGGAA 909784 36 100.0 30 .................................... TGTTACCGCTTGCGCTTCCTAGCCCGACAA 909850 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 909916 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 909982 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.5 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1174345-1173005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044354.1 Limosilactobacillus fermentum strain 2760 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1174344 36 100.0 35 .................................... AAGAGTAGTTTTCAAATCTTCAACGTCGAAGTTGT 1174273 36 100.0 34 .................................... AAATCCTCAAAATCACGCGTGTAAAGATCAACCC 1174203 36 100.0 39 .................................... AAATGGTCATCTTCAATTTGTAAGCAATCAATTTCTTCA 1174128 36 100.0 39 .................................... AGAATCTTGGCCGTGCTACCTCGTTCAATGATCGCAATC 1174053 36 100.0 35 .................................... TCTTTACTGCGATAAGATGCAGTTGATATCCCCAA 1173982 36 100.0 36 .................................... CCGTCGTTGTCTTGTTTCATTACTTGCATTTTAAAT 1173910 36 100.0 38 .................................... TAATCAAGTCTAACAGATGATCAATAGCCTTTTCATCA 1173836 36 100.0 39 .................................... CAAGGTTCCAACTTGCGTATAAACGTCATATTCACTATC 1173761 36 100.0 36 .................................... CTTAATGTAGGCCACGATAGTAGCAATTTCTTCCGG 1173689 36 100.0 35 .................................... ACACCATTTTTAATGATGGTGTCATCTTTTTTGTT 1173618 36 100.0 35 .................................... AAGTGTTCCATCGCTTTATCATCATTGTTAAAAGC 1173547 36 100.0 37 .................................... CGTAGATTGCCGTTAAAGTTAATAACTACGTCGTGCC 1173474 36 100.0 34 .................................... CTGCTTCACGGATGATCCGTTTAGCGTAGTCTGT 1173404 36 100.0 38 .................................... TCGATAACCTTCTTAAAATCATCCACCGTATAATTTTC 1173330 36 100.0 38 .................................... GCTGGCCTTTGCGTCATTGATGTACTCACTCACCGCTT 1173256 36 100.0 38 .................................... GAAGATCTCTGATGGTGTGCTTTGCTTCTGTTGGAATC 1173182 36 100.0 35 .................................... CATTTTATTTATCAACTATACAATTACCCCCTATT 1173111 36 97.2 35 .........C.......................... GTTTCTTCGTTGATATCTTCGTCGTATCCCCAGCC 1173040 36 72.2 0 .....G....A..T....TT......G....T.GTA | ========== ====== ====== ====== ==================================== ======================================= ================== 19 36 98.4 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAGGGATTCGACGTCAAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAAGATGGCTTATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGTTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTGAATGAGCACCTACCTGGTCGAATTATGGGCATCAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AAAAGCGAGAGCGTGTATCGAAATCCTTAGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTAAGCACTCCATAACAAGACGTATATGAAAATCAGTAGGCACCTCCTAAACTGGAAGAAAACAGTTGGAGGTGCCTTTTCAATTGCAAGATATTATTCCGGTGAATTTACATGAACGAAATCCAAAGGATTTCAAACCAACCAAGCCACAAATGGTAGCAAAACTATCAGTCAAACGAGTCAACGTCACCATTTTTGACACGATTAGCAAAGACCAAATGAGTGAATTAATGGAAGTGATTTTGAATCATGTTGGTTAACTGGCAAGATCCAAAACATGTCTACATTGTTTGCGGGAAAACAGACCTTCGTAAAGGGATCGATGGCTTAGCCATCGTCGTGCAAGAGAATTACGGTTTGGGACTATTTGATGATTCATTGTTCTTGTTTTGTGGCAATCGCAATGACCGTTTTAAAGGTTTATAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1396150-1394776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044354.1 Limosilactobacillus fermentum strain 2760 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1396149 29 100.0 32 ............................. CTTTGCAAGGTTAATAAATCGGACCGAACCGT 1396088 29 100.0 32 ............................. GCACCAGCCAACAACTTACGAGGAGTTTCAGG 1396027 29 100.0 32 ............................. AGGAGGGCTGAACAATGACTAAAAAACAAATG 1395966 29 96.6 32 ............................C GCTGATACGGTCGTACCGTATTTACTAGCAAT 1395905 29 100.0 33 ............................. ATGACTGGTAAGGATAAGTTTGACTTGGCAGTT 1395843 29 96.6 32 ............................C CGGTTGCCGTGCTTTGGAGCGTTGATATATCA 1395782 29 100.0 35 ............................. AACACTAATCCCTACATAATCATCATAGCGAGTTG 1395718 29 96.6 32 ............................C GTTAGCTTGTCTGCGTCCAGTTCAGAAATCGC 1395657 29 96.6 32 ............................C AGGGAACCAAATCACCCTTAAATCGGGAAACA 1395596 29 96.6 32 ............................C ATCGCCACACTTCAGGCTTCCGCCAAGACGCT 1395535 29 96.6 32 ............................C GACAACGTTGGAAAGCTGTTGATCGTGTCTGT 1395474 29 96.6 32 ............................C TTATATCGACCATAATGGGATTCACAACTACG 1395413 29 100.0 32 ............................. AAACTTTATTAGCTTCGCTATCCTTAACACTA 1395352 29 100.0 32 ............................. ACGTTGGGCATGTTGAGCGGCTTGCTTTTCTG 1395291 29 96.6 32 ............................C CAAAGTTGTTCACTCCATACATCCACATCGCA 1395230 29 100.0 32 ............................. ACTACAGGAAGTTTAATTGCTAGTTTTGTCGA 1395169 29 100.0 32 ............................. GAAACCGAAATCTGATTAGCACTTGCCCCATA 1395108 29 100.0 32 ............................. CTTCTCACCCTCGTCAAAGTCAGCATCATCGA 1395047 29 96.6 32 ............................C TGGATCTATCCAGGCCAAGTGCTCAAGCTAAG 1394986 29 100.0 32 ............................. TGTGCGTGTCCTGGTGAAGCTGCTTCCCGGTC 1394925 29 96.6 32 ......A...................... TTCAATAAAAGTATTGACTTTAATCTAAAGTA 1394864 29 93.1 32 .....................A......C ACCGTGCTCACCATTCTCGGTCTCTGCGGCTT 1394803 28 86.2 0 .......TT.....C.......-...... | ========== ====== ====== ====== ============================= =================================== ================== 23 29 97.6 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CATCATCAGAAAGAGCCATAGTGGGCGAGATGTCTCTAGCATTCGAAGTGATGAAGGCGAAATTCTTTTCCCTCGTGGGACTCGATTCAAAGTTGTAAAATACTACCAAGATGAAAATGGTAAAAATATAATCGAGGTGGAAGAAGTTGAATAAAGAAGAGCGGTTAAAATGGCTCCGAGCCCGTGACCAACCCACTGCTGAACAATTAAGGTAATGGGTAAAAGACTTGCCGAAACAAGAAATAACTCCCGAAGAGCGAAAGAAAAGAGAGACTTTTAAAAAGGCCGCCAGTAAAATCCTTGAGGTTGATAAGCGTCACCAAGAGAGGCAATCATGGAATACAGAGAATTCATCCCACAAAAAAGGCTGACTATTGAAATTAATGGCCAGCCTTATGAAGAGATTAAGATTACAACCAAAGATACTCATGAGTTGGTTGTTCTATTTTCACCGGAGAAAGTTGTTTGGTCTAAAACATACAACGTTAGCTTTAAACGGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //