Array 1 109529-108032 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHI01000010.1 Salmonella enterica subsp. enterica serovar Thompson strain CVM N45945 N45945_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109528 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 109467 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 109406 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 109345 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 109284 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 109223 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 109162 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 109101 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 109040 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 108978 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 108916 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108855 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 108794 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 108733 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 108672 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 108611 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 108550 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 108489 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 108427 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 108366 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 108305 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 108244 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 108183 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108122 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108061 29 93.1 0 A..............A............. | A [108034] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126886-125699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHI01000010.1 Salmonella enterica subsp. enterica serovar Thompson strain CVM N45945 N45945_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126885 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 126824 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 126763 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 126702 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 126641 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 126580 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 126519 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 126458 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 126397 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 126336 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 126275 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 126214 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 126153 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 126092 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 126031 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125970 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125909 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125848 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125787 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125726 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //