Array 1 864008-863739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084654.1 Pectobacterium versatile strain SR12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 864007 28 89.3 32 A..T.......C................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 863947 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 863886 28 96.4 32 ...........C................ CACGCGCCCTGATTCAGGTCGGCCTTCTGCGG 863826 28 89.3 32 A..T........G............... TCCCGTTGTTTGATTAGCGCCCGAGTTAATGC 863766 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCCGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTGATCGCGCTTTATCTCGCGCTCCCGCTGCATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGATGAGCGGATTATTGTGGAGTGATGG # Right flank : ATAAAGCTCACCTAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTATTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTAATTGAAGTACGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4567191-4565699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084654.1 Pectobacterium versatile strain SR12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4567190 29 100.0 32 ............................. GCACTTGATCGGTTTTTGTCGTGGGATGAACT 4567129 29 100.0 32 ............................. GCCGCAAACGCAGCCATATATTTGTTATTTTA 4567068 29 100.0 32 ............................. CAGGGTTTGAGGACTGCACTTGACTCTTCTTC 4567007 29 100.0 32 ............................. TCGGCAATCCATGCATAGTCGTTGTCGCCAGG 4566946 29 100.0 32 ............................. GAAACATCGATTGGCAATCAGTTCATCGGGAA 4566885 29 100.0 32 ............................. CGCCGTAAATATCTCAAGACTGGCGCTTATTT 4566824 29 100.0 32 ............................. CCGCGCGGTTGGCGCTGGCGTCATCTGCAAAC 4566763 29 100.0 32 ............................. CGCTAAAGAAACAGATTGAAGCGGATCATGAA 4566702 29 100.0 32 ............................. CAGATCATTGATGGAGAGATATTTGCAATAAA 4566641 29 100.0 32 ............................. AATGTGCTGTTATCCATAATCACCTTGCCGTT 4566580 29 100.0 32 ............................. GCTGCTAGGCAGCCTTGAAATATTCGCGTGAT 4566519 29 100.0 32 ............................. AATGCCGATTTTATACCCCGGTGAGGATGTCA 4566458 29 100.0 32 ............................. GCGTTGTTGTCGGCGGTGTTCGCTACTGGTCG 4566397 29 100.0 32 ............................. TTGCTGGAGTAACTCGTTACAGTCCACATCAT 4566336 29 100.0 32 ............................. CCCGATCTAACGGAAACCGCAAAATTTGTGTT 4566275 29 100.0 33 ............................. GCGGGTGGTTTTACCGCAACCGGTATGCCCGAC 4566213 29 100.0 32 ............................. TAACCAATTTGGGAAATACGCTGCGTAGTACA 4566152 29 100.0 32 ............................. GGTTCCTGCATAAAACACTGTAGCTGATCGTT 4566091 29 100.0 32 ............................. CAAGAGCCGGATTTATACCTATGTCCGGTAAC 4566030 29 96.6 30 .....................G....... TCCTCTCGCAGATGCATACCATCATGGCAT 4565971 29 82.8 32 .A......T....C.........GG.... AATAATGATGTTTTCGGAGGGGGTTCGGGGAC 4565910 29 96.6 32 ..A.......................... TGAGGACCGTAATCCGTCACCAAATCACTATA 4565849 29 96.6 32 ............T................ GATACAGGGCAAATCGAACAGGACTGTGACGT 4565788 29 89.7 32 .......T..T..C............... TGCATGGGGCTGGTAAAGGATTGGGAATTGGC 4565727 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAGTATTTTTAACGGGGAAGATTTTTACCGAGAAATAGAAATAAAAACGCAGTGGTATAACTCTTGCCGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGTGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTTAAAATCAATAAGTTAGCGATCTTTAACAACATAGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAATGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCTGCACGGGAGCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGATGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTAGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAGGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4570654-4569405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084654.1 Pectobacterium versatile strain SR12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4570653 29 100.0 32 ............................. ATACGTTTTTGACTGCGCTACCTTATAGGCCA 4570592 29 100.0 32 ............................. AATCATCTCTCAGTTCCATCATTTCCTCACTT 4570531 29 100.0 32 ............................. TTCGGTTTTCGTGTATCCAGGCGGGACGTTGA 4570470 29 100.0 32 ............................. CACCGTAAGGCCATCGGCACCGCAGTTGTTAA 4570409 29 100.0 32 ............................. GATTTGCATGGCGGAAGTAGCACTCCCAATGT 4570348 29 100.0 32 ............................. GTGCGCCAGCCGCTAACGGAATGGGAAGCTGA 4570287 29 100.0 32 ............................. CCTATCTGAGCGGAGGTGAGCCAAATTGGTTT 4570226 29 100.0 32 ............................. CCGGTTTTGATATCTGACACATCATCGCTACC 4570165 29 100.0 32 ............................. ATAGCTGAACTAAAACCCAGACCAATTGCATA 4570104 29 100.0 32 ............................. TAACAACGCCAACGGATTGGGATAATCACCGT 4570043 29 100.0 32 ............................. AGCGGGTGTTGCTATTTCTTGCCGCTAGGGAA 4569982 29 100.0 32 ............................. CACAATGCAAACATGCCACCATCACGCAAAAC 4569921 29 100.0 32 ............................. TGACTTGCGTTTTTTCAGCGTGGTGATTAAGC 4569860 29 100.0 32 ............................. CATGGCGGTTGTCAAATTACTTTGTGGAACGT 4569799 29 100.0 32 ............................. CTCTTCCATGGGCCGTTTTTGGCCTTGCTTGT 4569738 29 100.0 32 ............................. GCTCCGGATTGTGCCGCAGTTCTCATAATCCC 4569677 29 96.6 32 ..........A.................. TGGATAGAACTACGCATGGTTGACGGAGTTTG 4569616 29 100.0 32 ............................. GATACATCATGGCAAACACTGGCACGCGCTCC 4569555 29 100.0 32 ............................. GCGGCAGCGGAGCGTTTAGTTAGTGCAATTAA 4569494 29 100.0 32 ............................. CTACATTCAGAAATAAATCGGGTTTAACTGAA 4569433 29 93.1 0 .........................T.T. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : AATAGTAGAGGTGTAAATCATAACGGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //