Array 1 101668-102363 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFG01000001.1 Latilactobacillus sakei subsp. carnosus DSM 15831 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 101668 36 91.7 30 A.C.....G........................... AAACCACTTTGTAAAATCTTCTTGAACCGT 101734 36 97.2 30 .........A.......................... TGCGAAAGGCGGCGAGATTAATCCTGAACA 101800 36 100.0 30 .................................... ATCATCCTAACTGACCCATCAAACTGTTCA 101866 36 100.0 30 .................................... CCAATCCTTTAAGGCGTGAAATAGTATTCT 101932 36 100.0 30 .................................... TGTCGTTGTCCCAGATTGTAATAACTTCTT 101998 36 100.0 30 .................................... CGTGCAGTTTATTATCATATTCGACAATTG 102064 36 100.0 30 .................................... ATAGTTGCGTTCGCTAGACTTATAGGCCTT 102130 36 100.0 30 .................................... AATGGAATAGTTTAATTTGGGATGATAAAA 102196 36 100.0 30 .................................... CTAAAACGGCAGTGGTTAACAATGGTTTGT 102262 36 100.0 30 .................................... CATTATCGAGATTTTAACAAAGATATTAAA 102328 36 80.6 0 .............................TGCTCCT | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.2 30 GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC # Left flank : AGCAGCCCGCATAAATTCAGCGTTTGTAACCCCTTGAATTTCAGATGGATATTGCATCGCTAAGAACAAGCCAGCGCGCGCCCGTTCATCAACTGGCATTTCAAGAATATTTTGACCGTCTAATTTAATTTCACCTTGAAGCACTTCGTATTTAGGATTACCCATGATGGTTTCTGAAAGGGTTGATTTCCCGGTCCCATTTGGTCCCATGATGGCGTGAATCTCACCCGTATTCATTTCTAAGTTAACACCTTTTAAAATTTCTTTACCGTCAATTCCGACGTGTAAATCGATAATTTCTAATTTAGACATTACTGACCCTCCAAAAATCGCATTATAGCACGTTGTTGCTGACTTAATTCTAAGCTAAATGAGAACGCTTTTCAATAGTCGAATCGTGAAATATCAATCAAGGATATGCATTAAATCTAATAAAAAAGAGTACCCCTTTAAAGGTACTCCCCAAACTTAAATTAAAAGAATTTACGATTATTAGCGTG # Right flank : ATCCTAGTATTTGGTACATAAATTTCTGAACAGTTGTGCCATAATTAAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 859-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFG01000025.1 Latilactobacillus sakei subsp. carnosus DSM 15831 NODE_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 858 36 100.0 30 .................................... TCAGCCAATGCGTCATAATCAGCTTGCGAG 792 36 100.0 30 .................................... TATCCAAGCGATAGTGTACTATTACTTATA 726 36 100.0 30 .................................... TTGGCCAAGCATTGAAGCCGTTAAAAGCTA 660 36 100.0 30 .................................... TGGGGTCTAATCCATCGTAAGCTTCTTTTA 594 36 100.0 30 .................................... GTGCCAATAAGGATCTTGCACGCAAAAGGA 528 36 100.0 30 .................................... TTACTTCGTTTGTAGACTATAATGAGCTTT 462 36 100.0 30 .................................... TAACAATGGCATTTTTAACAACAGATTATA 396 36 97.2 30 ............................A....... TGAATACTACGGGTAACCGTTTAAAGACGT 330 36 97.2 30 ............................A....... TGTGCTTCAACCTTGTCCAGGCGGTGCTTA 264 36 97.2 30 ............................A....... AATCTAACGTTTGACTTGGCATTACAGTAA 198 36 97.2 30 ............................A....... TGGTGTTATCGGTGTAAGTCCAAATTGTCC 132 36 97.2 0 ............................A....... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAAC # Left flank : GCGGTTGATTTAAATCATCTTTTTCAAAATAAGTTGATCAAAAAATTTACAGCCGATCTAACGGATGAACAACGACAAAAGGTAGTTAACCTGAATAATGAATTACGAGCCACTATTTTAGAAGCCGCGTTTATGTATGAATTAGCTTTAGATATTGACCATGAGTTAGATTTGCAAAAGTTAATTAAATTTTGCAATTTAAAATTTTCGAATGATGTTCAAGATGATCCATATGGTATAATAGAAAGCATAGTACAAACTGCTATAGAGTTACAAGAAACAAGAATTATCACGTTGATCAACGTTTCGCACTATCTTAGTATCAACCAGTTTAATGAACTGGTAAGACTAGTTGCGACATTGGATGTGAAACTCTTTATCATTGAATTTTCAGAATTGGCAACGCCTGACAGGTACCAAGAATGCTGTTATTATCACATTGATAATGATTATGTTGAATGGCGTTACGAATAAAGTGAGTATTTGATGAAAAAACATCG # Right flank : CACGCGCAATAATAGACACACTTTCGCGCTAGTTTTAGAAGTGCTCCTATGTCAATAAATGGCACATCTTTTTCTAAACACTCGTTCTAATTCTGTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAAC # Alternate repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //