Array 1 5191-3908 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCYV01000199.1 Acinetobacter baumannii strain ABUH428 ABUH428_NODE_129.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5190 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 5130 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 5070 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 5010 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 4950 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 4890 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 4830 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 4770 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 4710 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 4650 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 4590 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 4530 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 4470 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 4410 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 4350 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 4290 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 4230 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 4170 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 4110 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 4055 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3995 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3934 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 97.4 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TCGCATAGATGATTTAGAAACATGACCGAAAAAGCCAAAATGGTTTTATTT # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4644-4970 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCYV01000062.1 Acinetobacter baumannii strain ABUH428 ABUH428_NODE_130.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4644 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 4704 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 4764 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 4824 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 4884 28 100.0 31 ............................ ATTAACTTTTTATGATATAACATAAGAACAC 4943 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATGCACATCTCAAATTATTGAGACTAATTAAAGAAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24963-22714 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCYV01000003.1 Acinetobacter baumannii strain ABUH428 ABUH428_NODE_63.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 24962 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 24902 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 24842 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 24782 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 24722 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 24662 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 24602 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 24542 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 24482 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 24422 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 24362 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 24302 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 24242 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 24182 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 24122 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 24062 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 24002 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 23942 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 23882 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 23822 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 23762 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 23702 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 23642 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 23582 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 23522 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 23462 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 23402 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 23342 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 23282 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 23222 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 23162 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 23102 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 23042 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 22982 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 22922 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 22862 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 22802 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 22742 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 38 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TGTTCATGATACTGCTTCGTCAGCGCCCTCATGACTTACTAACCTCCTAATCGGCAGATTTGCTTATGTGACA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 601-1408 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCYV01000117.1 Acinetobacter baumannii strain ABUH428 ABUH428_NODE_168.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 601 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 661 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 721 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 781 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 841 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 901 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 961 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 1021 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 1081 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 1141 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 1201 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 1261 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 1321 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 1381 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AACAATTGCCTGACTGGTATGAAGAACCAGTAGTTGTTCATCGCATAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //