Array 1 159933-157641 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXR01000005.1 Neisseria meningitidis NM2781 NM2781.contig.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 159932 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 159866 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 159800 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 159734 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 159668 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 159602 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 159536 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 159458 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 159392 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 159326 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 159260 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 159194 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 159128 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 159062 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 158996 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 158930 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 158864 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 158798 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 158732 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 158666 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 158600 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 158534 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 158468 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 158402 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 158336 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 158270 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 158204 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 158138 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 158072 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 158006 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 157940 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 157874 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 157808 36 100.0 30 .................................... CGATGTTGTGATCGCCTTCCTGCAGGCGTA 157742 36 100.0 30 .................................... CCAAATCGGCAACGGTAATGGTTTCGGGAA 157676 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 35 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGGAAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //