Array 1 362180-363611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBD010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 329 A NODE_2_length_542544_cov_35.4127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 362180 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362241 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362302 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 362363 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 362424 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362485 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362546 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362607 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362668 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362729 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362790 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362851 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362912 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362973 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 363034 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 363096 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 363157 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363218 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363279 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363340 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363401 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363462 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363523 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363584 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379743-381890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBD010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 329 A NODE_2_length_542544_cov_35.4127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379743 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 379804 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379865 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 379926 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 379987 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 380048 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 380109 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 380171 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 380232 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 380293 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 380354 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 380415 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 380476 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 380537 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380598 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380659 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380720 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380781 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380842 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380903 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380964 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 381025 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 381086 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 381147 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 381209 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 381312 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 381373 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 381434 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 381495 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 381556 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 381617 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 381678 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 381739 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 381800 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381861 29 96.6 0 A............................ | A [381887] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //