Array 1 2078056-2078543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027006.1 Akkermansia muciniphila strain EB-AMDK-30 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2078056 31 100.0 34 ............................... CTCCCGCACAATGGATTTAATACCCCGGATGCCT 2078121 31 100.0 35 ............................... CTCCGTTTGTGTGTGAGTTTGCTAGGTGCTGTATA 2078187 31 100.0 34 ............................... AGCATAGCCCCGGCCTCCCCAAGGTCATGCGTAT 2078252 31 100.0 33 ............................... ATCATCGCCGGTACTGCCGACCACCCCGGAAAA 2078316 31 100.0 35 ............................... GTTTCGAGCTTGAGAACCTTGTCCAGCTCAACCAG 2078382 31 100.0 34 ............................... CATTGATTACCCTTCTTAACAACATATCAACCAT 2078447 31 100.0 35 ............................... TTATTCGGCTCTCCTTTTATGGAAGCATTGTGACC 2078513 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAGAAAAGAACGGTTAGCATCAATGGGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGATTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGATCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CGGTAATTTCAGGAAGTGAAGAGTGTAACGCGCCAAGACATCTGATAGAACTACGACAAGTATCTTATATAACTTGTCAAATTGACTGCTCCGTGCAGGGGGTCTGCATCGACTCTGCCTCCCCCTTACAAGCGGCCAGCAGGTCTCCCCAGTCCACTGCCTCGTCGTCCTCCCTGGCCACTCCCTCCCGGAGCATCCTCTCCCTGGCGTCGGCCAGCAGGTGCATCACTCTGGCCCGTTCGCTGGCGGGTTGGTTGGACATGCGGGGGCTGCCGGTAATCACCACGGCAAACCTGGCCGCGTAACTCTCGGCGCTTACCGTGCGGCTGGGCCAGCACCAGGCCGTCCATATACTCCACGGGGAACGTTTACGCCATGGCTCATCAATGCGGCACAATGCTGCCGGAACCCTGGCCAATACCTCCCGTCCAATCGTCCAATCTTCCGGGGCGCGGTCATCCAGGAGACTCCAATCCATCTCCCGATAAAGACGTCTGGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2111617-2111841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027006.1 Akkermansia muciniphila strain EB-AMDK-30 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2111617 31 100.0 34 ............................... GCTTGAGGTTCTGGAAGATTATTTTAACCAGAAA 2111682 31 100.0 34 ............................... CCTCATCAAAGTCGGGAAGGGTGGCGGATTCCAG 2111747 31 100.0 33 ............................... TAGTCTAACAGGTTTTTTAGGTTTTTGTTATCA 2111811 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== ================================== ================== 4 31 98.4 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : GTTCCTGGCGGCCTTTTTCTTTTCAATCATCTTCTCTCTCATCCCTGATCACAATCCACACGTTGTCGAGCATATCCCTCACCCAGCACGTCGTTTTACTTCCCTCACGAGTTGTCCACATCAACACGACAGCGGTATCATGGAGGTGATAAATTTGCGGGTTCTTTTTCTTCCGGTCTGCTGGGGATATAACGGTAACGGAGCCGTACAAGGGGATGCAATATGTAGGTGTACACATGCGGGGCATCCTATCATGATTTTTTACCTTGTCGTTGCTCTATCACCTACTCTTTGCAGCTCTTGTGCAGCATCCCTGCATAGCCTGTGTACTTATATCAGATACTTGTCATTTACCCTCTTTTCAGCTCCGACTTTTATAAGATAGCTCATGACTGGTCTGATCCTCCTTAACTCCCGTGTCTTCTAGGGTTCCAACGGATTTCAACCCTGATTCAACTTATATCAACTATCCTGTCATTCCTCAAGAGATGACCCATCTT # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCTATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTATTCC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2694136-2691145 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027006.1 Akkermansia muciniphila strain EB-AMDK-30 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2694135 33 100.0 34 ................................. CCCGGGTAGCATTCATCATGTGGGGGAAGGGGAA 2694068 33 100.0 34 ................................. CACATTATAGCACACTCTGAGTCCTCACCGTAGC 2694001 33 100.0 34 ................................. CGTCAAGAGGCTGCGTAGGTACCGCTCACTTTTA 2693934 33 100.0 34 ................................. CTCGTCTAACCGGAAGCTGACGGAACCACGGCAT 2693867 33 100.0 35 ................................. TTGAACTCTAAGGGGAAAGTGATATGTTCTTCCCA 2693799 33 100.0 35 ................................. TATCTTGAATACGGAGATACAGACGGCCTAACTCC 2693731 33 100.0 34 ................................. CCGTTTTCGCCAATCCAGACGACAAGGTCTTTGA 2693664 33 100.0 34 ................................. GGGATAGCACAACGCGGGGTCAAGTCAATAAAAT 2693597 33 100.0 35 ................................. GGATAGAGCACTGCCGTGATGGATGACTTGATGTG 2693529 33 100.0 35 ................................. CCGTCGTAGTTGATAGACCGGGAAATCAATATAAA 2693461 33 100.0 34 ................................. GCGGCACATTGGAATCAAAGCGCGAACTGTTCCG 2693394 33 100.0 35 ................................. TTGATAAAAAAATTTGCAATCGTTGCAAATTGAGG 2693326 33 100.0 37 ................................. TTGTTGATAAATCCGAGCAGAAAATCCCGGATAAAAC 2693256 33 100.0 34 ................................. CTTTTCCCGGTTTTCATCTTTTCTCCCCCCCCTT 2693189 33 100.0 33 ................................. TGTATCGGCGCACGATATGCGTAGATGAACAAG 2693123 33 100.0 34 ................................. TCCGTCGATAGCGGCTATCACCTGAACGGATGAT 2693056 33 100.0 35 ................................. CGGATGGTCTCTAAGCCATAGCATCCATTGCGTTT 2692988 33 100.0 34 ................................. GTCTACATCGAAGACGAACCCAGGGTGACGGCCA 2692921 33 100.0 36 ................................. GTTTTTTCCTTCTTTCCTTTTTTAGGGGCAACAACT 2692852 33 100.0 34 ................................. GAGGAAGAGAACAGGGCTATTTTGCCCACGGCGG 2692785 33 100.0 34 ................................. ATTTCCTTGAGCATTTCAATGGCATCCTGCAGAA 2692718 33 100.0 35 ................................. CCTCTCTTTTCAGGCGGAAAGGCCACGAACAGCGA 2692650 33 100.0 37 ................................. AACTGTATATGCAATTTAAACAGGTGAAGGGAAAAGA 2692580 33 100.0 35 ................................. TTCCAGCATGCGCTCCCTCATGTTGGCCACAAACT 2692512 33 100.0 34 ................................. TCCTTCGACCTGCGTGGCGACGGACTGGAAGGCA 2692445 33 100.0 34 ................................. GGAAGAGGACGATGGGGATCCATACTGAAATCTG 2692378 33 100.0 33 ................................. GCGTCGCCGGAGGCGTCGCGGTAAGGCATGGAG 2692312 33 100.0 35 ................................. TTTCACTCCGCGCTGAAGAATAGGGATGATGCCCT 2692244 33 100.0 35 ................................. TTGATGGTTTAAATGTTGATTTTGGCGGGGATCCC 2692176 33 100.0 35 ................................. CTTAGGTGTGCATATCAATGTAGATGTGTCTACTT 2692108 33 100.0 35 ................................. TGGTTTGATAGGTAGCCTTAACTTGGAATTCTCAA 2692040 33 100.0 35 ................................. TTCCGTATTCCGGTTTTTTGCCGCCCGGTACCCGG 2691972 33 100.0 35 ................................. CAGAACGGAGAAGACCACCAACGTCTGGCTCACTC 2691904 33 100.0 34 ................................. GTGGTTGATTACAAGTTCGGCCGTCTCCCCGTGG 2691837 33 100.0 33 ................................. CTCATGCCCACCAAAGAAGAGATCAAAGACTGG 2691771 33 100.0 33 ................................. GCGATAAGATGGAAGAAAACCGTTTCCTTTTTT 2691705 33 100.0 34 ................................. GTTTGTTTCGGCCTTGGTATTGTAGAGGGTTGCC 2691638 33 100.0 34 ................................. AATCAGGCTGTTCGTGTTGCAGAACTGCTGTTGG 2691571 33 100.0 34 ................................. ACGGTGGAAAAATCAAAGTTCGGCGGCCCTGTCC 2691504 33 100.0 38 ................................. CTATGTACGAAGCGGGAAATGCTCAAAGGATTGCGGGG 2691433 33 100.0 33 ................................. TGATTGGTACTATGAAGCAGGTTGTTATGCTTG 2691367 33 100.0 34 ................................. TTAATTTACAGAATAAAAGTATCTTGCGAAAGAT 2691300 33 100.0 33 ................................. TTTTAAACTCCGAAGGAGTACACAAACGGGCGG 2691234 33 100.0 24 ................................. TTGATTTGGTCCTCGCCCGGTATG Deletion [2691178] 2691177 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 45 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGGCAAGTGGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCTGGTTCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTTTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : AGAAAAAGTTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2703028-2702607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027006.1 Akkermansia muciniphila strain EB-AMDK-30 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2703027 31 93.5 34 A..A........................... CCGGTTTCCACGCGCACGGTATTGTTGAACTGGG 2702962 31 100.0 34 ............................... CGCAAGAAGGAATCCATCGACGGATTCCAGAACC 2702897 31 100.0 34 ............................... TTCAAGTCAATCTGCTCCCATTTCAGCGTCGCCA 2702832 31 100.0 34 ............................... TTCAAGTCAATCTGCTCCCATTTCAGCGTCGCCA 2702767 31 100.0 34 ............................... TTCAATCATGGTCAGGGCATACGTTAAATCTTCC 2702702 31 100.0 34 ............................... ACCTTACCCAGCGCGGTAAAGACTTGCTGTTTAT 2702637 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 7 31 97.7 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : ATCATCAGGGCGAGGAAATGACGCCTTTTGTCCGTGCTTTATGTTGCGATGATTAGCCCACTGGGCAGATACAATTCAGGCCGTCAGGTTGTTCCTGGCGGCCTTTTTCTTTTCAATCATCTTTTCTTTCGTTCCTGATCACAATCCACACGTTGTCGAGCACATCCCGCACCCAGCATGTCGTCTTGCTTCTTTCACGAGTTGTCCACATCAACACGACAGCGGTATCATGGAGATGATAAATTTGCGGATTCTTTTTCCTTCGGTCTTCGGGCGAGATAACAGTCATGGAGCCATACAAGGGGATGCAATATGCAGGTGTACACATGCGGGACATCTTACCATGATTATTTTCCACGATGCTTGATAATTTCCTCTTCTGACAACAACATTTTCCACACTGTCTTTCTCTGCTCACTTAACGCTTGCACCCCTTGATTTTTCTAGCGTTCACCCCTATTCACCCTAAATTCACCCCTTTCCACCCTTCATTGATAAAG # Right flank : GTCGTAGATTGAACGACCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2724045-2723288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027006.1 Akkermansia muciniphila strain EB-AMDK-30 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 2724044 31 100.0 33 ............................... TTGACGCGATTTTTAGCGTTGCGCCCTTCCGCA 2723980 31 100.0 34 ............................... CGCACCGTCAATACTTGCATAATTTTCGTAATTA 2723915 31 100.0 34 ............................... CAGGCGCAGGCCGTAAAGCATGCGCCCCTTATCC 2723850 31 100.0 35 ............................... TGAAACTCCGCGCTCAAACAAATACTTCCGCGGGG 2723784 31 100.0 34 ............................... CTGATATGCGGAAGCATCAGGACAAAATAATCCT 2723719 31 100.0 36 ............................... ATCCACATTTTGTGAAGCTTAAGGATTTCGTTTAAT 2723652 31 100.0 34 ............................... CGTCTGCCCGTGCCCGTCCTGGTATTCGTCCGCG 2723587 31 100.0 39 ............................... CATTTTCCGAACAACCCTATTGTGCCCGCAACATCACCG 2723517 31 100.0 34 ............................... CGGCAGTCGGTCATCAGGGCGGAAATGCGTGTCT 2723452 31 100.0 35 ............................... TCTTTTTTTGTAAGAGTTGTTCGAAAAATAGGCAA 2723386 31 100.0 35 ............................... AATCAATTTACTGTTATCATCCGCAAGAATGCTTC 2723320 31 77.4 0 ..............T..A...C..G..C.TT | C,A [2723294,2723300] ========== ====== ====== ====== =============================== ======================================= ================== 12 31 98.1 35 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : GTGGAAAAATTATCAAGCAGTGTGGAAAAACGTTCCTGAACGCCACCCCGCTGCATCTTTATTGCAATATCGATGCCTCGCCCCTGCAAACGGCCAACAGGTCACCCCAATCCACCGCTTCGTCGTCCTCCCTAATCACTCTCCCCTCCCGGATCATCCGCTCCCTGGCGTCGGCCAGCAGGTGCATCACTCTGGCCCGCTCGCTGGCCGGCTGGGTATCCAGCCGGGGATTGCCAGTCGTAACGACAGCAAACCGGGAGGCGTAGCGCTCCGGAGAGGCCGTCAGGCTGTACCAGCACCAGGCCGTCCATGAACTCCACGGCGTGCGCTGGCTCCATGGTTCATCAATACGTACCAGCGCGGCGGGCAAACTGGCCAATGCCGCCCGCCCGATGGTCCAGTCCTCCGGAGCTAGGGCATCCATGTTCTCCCAATCCATATCCCGGAGCAATCGCCTGGCGACCCGGCCGCGCAAGGCGTACAAACAGCCGTAAATCATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //