Array 1 789-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_BQGU01000334.1 Klebsiella oxytoca strain TUM17569 sequence334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 788 29 100.0 32 ............................. CGATCGAAAAAGAGGCTCGCAGCCTGGTGCCG 727 29 100.0 32 ............................. CTTGGCGATCTTGTTCGTGAGGTATTCGGAAG 666 29 100.0 32 ............................. ATTGACCAGGCTTCCGCTGACCGACTGTTGAA 605 29 100.0 32 ............................. GCACTGACACACGAGGAGCTTTGCCAGTTAGC 544 29 100.0 32 ............................. ACTCCCTTCTTGCCTGCTTCCACTGCTCTGAT 483 29 100.0 32 ............................. TTATCTCAGGATATGAGTAGAACAGCAAAAAA 422 29 100.0 32 ............................. GTTTGTTTCTGTCTCTTCGCGCATTCCTTAAG 361 29 100.0 32 ............................. AACGGGCGCAGATATCCATAGGTCCACGTAGC 300 29 96.6 32 .........A................... TTACTGGAGATCTGATGCACTTGCGTTCAAAT 239 29 100.0 32 ............................. AAGATCAACCCGCGGATGAACACATTGATGCC 178 29 100.0 33 ............................. GCCAGTGAACAGCCTGGCGCTGTGGCTGAATAA 116 29 100.0 32 ............................. GCGGTGAACTCAGTTGCAAGTGGGCAGGGTGA 55 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGATATGGTTAG # Right flank : ACAGTCAATGTTTCCCGAACATGGTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 668-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_BQGU01000365.1 Klebsiella oxytoca strain TUM17569 sequence365, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 667 29 100.0 32 ............................. ATACTTGATCGGTTTTGCCGTATTTTTTTGTT 606 29 100.0 32 ............................. CATCACTGATAGCTTTCGGGATTTTGTTGATC 545 29 100.0 32 ............................. TACGCCTTCTTGTTCGTCAGCGGGTCGACGTA 484 29 100.0 32 ............................. TTTTTGGCTTGAAAATGCTTTTTGTGGATAAC 423 29 100.0 32 ............................. CTGCTGGGCGTGGCCTGCGCTGTAAATACGTT 362 29 100.0 32 ............................. GTTAATCATGCGGTTCGCCAGCTTATCAGTGA 301 29 100.0 32 ............................. TGTTCGATATCACTGACGAGGTAGACATAGCG 240 29 100.0 32 ............................. CTTATCTTGAGCAACCGCGCAACCGCCTTGGC 179 29 100.0 32 ............................. TTTCTCCGCCCATAGGTACAGGGTTTGCGTAC 118 29 100.0 32 ............................. CCTAAAACTGGCGTCACAACAATAAACACCGG 57 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ATTCACAACGCCCGCGCCACCGG # Right flank : GGTAATATTCTATTAAATTTAATCAGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 181070-182015 **** Predicted by CRISPRDetect 2.4 *** >NZ_BQGU01000006.1 Klebsiella oxytoca strain TUM17569 sequence006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181070 29 100.0 32 ............................. CTGCCACCCATTCGTTAACCAGCCAGACACCC 181131 29 100.0 32 ............................. ACCACGAATGAAAATGTGGCCAGGAAAGCCGA 181192 29 100.0 33 ............................. GTTGGCCAGGCATACGCAGCAAATGCCATTGCG 181254 29 100.0 32 ............................. ACTTGTTCAGAAAAAACCCCATTAGGAGGTTA 181315 29 100.0 32 ............................. GGTGCTTGCCTGGGTAAAACTGAACAGGCTTA 181376 29 100.0 32 ............................. ACCATTCTCATCATTCACGGCACGCAGTTAGT 181437 29 100.0 32 ............................. CCGTTGATTTTTTCCGACGCTGGCTCAGTCTC 181498 29 100.0 32 ............................. CGCTTCCGTTTCCTGAGCATATAGGTCGCCAT 181559 29 100.0 32 ............................. CGACCGCCAGCGGCGTTGTTAAACACGCCTGG 181620 29 100.0 32 ............................. GTGATTCCAGCGTTAACCCGCAACAGTTCATG 181681 29 100.0 32 ............................. TGAAAGAATTAACGCCGGGAGAAATGACGGCA 181742 29 100.0 32 ............................. TGAAAGAATTAACGCCGGGAGAAATGACGGCA 181803 29 100.0 32 ............................. GGTACTGCCCTGCACTGTCTGCTGCTGGAGCC 181864 29 100.0 32 ............................. ACAACGCAGCCAACTGAGATTCAGAAGGCAGC 181925 29 96.6 33 ............................A GCTCCCGCTGGACGCTTCGACATGTCTGCGAAT 181987 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.7 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTAGCTGCTGGTGAGATTGAGCCGCCTAAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGA # Right flank : GGTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103424-104427 **** Predicted by CRISPRDetect 2.4 *** >NZ_BQGU01000010.1 Klebsiella oxytoca strain TUM17569 sequence010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103424 29 100.0 32 ............................. TCAGTAGTGCGATAGCGCCACGCTACCGGCTC 103485 29 100.0 32 ............................. GTTCCTGCCGTCTGTAGGCAGCGCTAAACTCT 103546 29 100.0 32 ............................. TTACCTTTGTCGCTTTTACAGAGGCAATGGAC 103607 29 100.0 32 ............................. CCGGTATCGCATCGTTTTGCTTTTACAACCTG 103668 29 100.0 32 ............................. GCCGCTGGCAGGTGATGCGGCGCGTTAGCGAT 103729 29 100.0 32 ............................. GCGTTAACCGCTATCGTGCTGGCTTCCGTCTC 103790 29 100.0 32 ............................. TCAACCCGAGAATCTGCGAGTTAGTGGCGCCA 103851 29 100.0 32 ............................. GGATGCCTGCCGCGCCGCCATGCTGCAGGAAC 103912 29 100.0 32 ............................. GGATGCCTGCCGCGCCGCCATGCTGCAGGAAC 103973 29 100.0 32 ............................. GACGCCGAACCAGAGGAGGATGAGCCAGAGGA 104034 29 100.0 32 ............................. TACAACATGCTGGCGCAGCGGCATACCATCAG 104095 29 100.0 32 ............................. CAACCTGTGTGCGCATAGCCTTGATCGCTTTC 104156 29 100.0 32 ............................. CGTAACGCAAATTCAGGCAGATTATTTAACCC 104217 28 96.6 32 ............-................ ATTGATCGCGCTTTCTCGCGCATCTCAGAAGA 104277 29 96.6 32 ...............A............. GGGCGGCCGGTAGTCGTCCTTTCCAATAGTGA 104338 29 96.6 32 .............T............... AACAGCCCACAAAACTTTTTGCATGGGGCCGC 104399 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCATACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGCGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : ACAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCCTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGATCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //