Array 1 88301-89975 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMO01000004.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N51250 N51250_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88301 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 88362 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 88423 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 88484 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 88545 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 88606 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 88667 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 88728 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 88789 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 88850 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 88911 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 88972 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 89033 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 89094 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 89155 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 89216 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 89277 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 89338 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 89399 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 89460 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 89521 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 89582 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 89643 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 89704 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 89765 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 89826 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 89887 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 89948 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6242-10055 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMO01000018.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM N51250 N51250_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6242 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 6303 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 6364 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 6425 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 6486 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 6547 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 6608 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 6669 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 6730 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 6791 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 6852 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 6913 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 6975 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 7036 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 7097 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 7158 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 7219 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 7280 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 7341 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 7402 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 7463 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 7524 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 7585 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 7646 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 7708 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 7769 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 7830 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 7891 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 7952 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 8013 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 8074 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 8135 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 8196 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 8257 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 8318 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 8380 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 8441 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 8502 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 8563 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 8624 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 8685 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 8746 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 8807 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 8868 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 8929 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 8990 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 9051 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 9112 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 9173 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 9235 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 9296 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 9357 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 9418 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 9479 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 9540 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 9601 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 9662 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 9723 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 9784 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 9845 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 9906 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 9967 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 10028 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //