Array 1 75566-76193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044076.1 Providencia stuartii strain FDAARGOS_645 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75566 28 100.0 32 ............................ ACTGGATCGATGTTCGCGTAAACATGCCGAGT 75626 28 100.0 32 ............................ GATTATGAGTGATGGAAGTGTTACGGCAAGGG 75686 28 100.0 32 ............................ ATTATGAGCGTCAAGTTGTACTCACACTGATC 75746 28 100.0 32 ............................ TTTTACGGTGATCTGGATGGCTTCGTTAGCCG 75806 28 100.0 32 ............................ TGAAGACCGGCTTGAGCGTTGTTCTAAACAAA 75866 28 100.0 32 ............................ ATCAAAACCAGCCTCCGCTGTCGCTTCGGCTA 75926 28 100.0 32 ............................ ATTGTTGTTGTGAAGATGACATATTTAGCCCC 75986 28 100.0 32 ............................ TGCAATTGGAAGTTATAACCAAGGGAACTAGA 76046 28 96.4 32 .................T.......... TCGAAGATTTGGGTCACTTGGTCATCTGTTCT 76106 28 96.4 32 .................T.......... ATCGACTTGAATAATCCAGAGGTTATGTATTC 76166 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGCAAGGCTTAGTTAAAGTTGAATTATTACTTGATAAACAAGAAATGGAGATGCTCACAAGGAACTGTGCATTACGTAGACCAGGAAGAGAGCCATATGATATCGCTGAATATCTCTCAATGTTGATTAGAATTGATGACCGTTCAGCGATATATTTGGTTACAGAACTAAATAAAAGGCGCTGTAAAAAGTGCAATGAGCAGTTGCCGGTATCTGAATGTTGTTTAAGTGGTGATCATAAATGCTGGGTAACTCATGGATGGCATGAATTAAAGTTGATGTAACAAAGCATCACAGATAACTCAAATTTAGAGTGTCGCTATTAATTTTGATGGGTATAGAAGATGTGCTGTTTTCCTCTTTTTTACCCTTCATTTTTCCACCTAGAAATTATTTGTTAAAAATCAATCTATTACACCATGCTGAAATATGGAAGGTATTTCTCATAAAATTAGGTGTAATTTATTGTTGAATATGGTTTTTTTCATGATAAGTTATA # Right flank : GTAATGTTTGATAGCATTAACTGGTTATATAACCATGCTTACTGTATAATTTACTTATTGGTCTGAACACCCAATCATAACACTTGCTGTGTCTACTGAGAGAAAAAGTATGGCACAGCATAGCTTTATTAAAATGTCTAACGACACTCTTGTACCGGCTAATCCCGCTGCGAGAGATTTCCTGCATTCAAAAATCAAGTGTGGTGATGTGCTTTCGGCTGATTTCAAGAAAGCTCGTAACCCACGTTTCCACCGTAAATACTTCGCTTTACTCAATCTAGGGTATGAATACTGGGAACCAACAGGCGGCACTATTTCGCCTGAAGAAAAAGAGTTAGTGCGTGGTTACGTTAAATTCCTCGCTTACTACACTGATAACGACGATGCCCTCCAATCTGCTGCGGATGTTTACCTCGATGAGATAGCACAGAAACGTGCTCACAATATATCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTGGTAGAGCAATCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 94528-95155 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044076.1 Providencia stuartii strain FDAARGOS_645 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94528 28 100.0 32 ............................ ATTATTTCTGCAAAGCGAACAATGCGATCCAT 94588 28 100.0 32 ............................ TATAACAGGCTGTCCTCTGAAGTCGCTTTTGT 94648 28 100.0 32 ............................ AGTGCCAAGAGGTACAAATATCTGAATAAACG 94708 28 100.0 32 ............................ TGACTTCGATTGATACTTTTATTCTGATTAAT 94768 28 100.0 32 ............................ CGCTTGCGATGCCGGAAGCGGAAAGTTGAGCG 94828 28 100.0 32 ............................ GTTAACAGGCACAGCAACCGCCTCGTTAGCGG 94888 28 100.0 32 ............................ CAACCTCCTGAATACACGGCCTCCGGTGCATA 94948 28 100.0 32 ............................ TCCATTGCGGGGGTGGGTGGTTTATTTGAACT 95008 28 100.0 32 ............................ AAGTTCGGAGGGATTGAACGCCAAAAAACGCT 95068 28 96.4 32 .......A.................... ACGACTGTGGAGATGAAACAAAAATAATCCAA 95128 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.3 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAGCCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAGTTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTTCCTTTAAAAATAATAAGTTATATTCTGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : ATTGGCGATATCGCACTCATGGATGATTTTCTGGTGTACTCCGGATGCAACTCCCGCTATCGTTGGCAACACCAGAGAAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 100994-101381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044076.1 Providencia stuartii strain FDAARGOS_645 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 100994 28 100.0 32 ............................ ATAGGTGTCATCGATAAGATGAATTTATTCCC 101054 28 96.4 32 ..G......................... GAACCGTGAAAGCATATCGTATTATTGGAGAA 101114 28 100.0 32 ............................ AGATAGATTTTGGCTTGATGTCACCATCAGCG 101174 28 100.0 32 ............................ TTTAGAAAAAAGAAAGCCCCGCACTTGCGAGG 101234 28 100.0 32 ............................ TCCTGCTAGCCACCAATCCAGTGTCGGATAGT 101294 28 100.0 32 ............................ TTTCAGGCAATATCGAAAAATACACTCCTAAT 101354 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTTATATTTATGGATGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTAGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGACTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTCTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTATTTTAATAGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTTACCCTTTAAATTTTTAAAGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAAGGGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : ATACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTCAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACAGGGAGATTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1484540-1484092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044076.1 Providencia stuartii strain FDAARGOS_645 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1484539 28 100.0 32 ............................ TACCCACGCCACTCTATTTATGTGATTTAACC 1484479 28 100.0 32 ............................ TATCGCAAGATGGTGCTTAGAAGCTAACGGAG 1484419 28 100.0 32 ............................ ATTCAATAACGTTTCGGGAGCCGGAGGCTTTT 1484359 28 100.0 32 ............................ TTTGGTTCATTGAATACGGGCGATATGCTGAC 1484299 28 100.0 32 ............................ TTTCATTTCGTTAGTGACTGTGCCACCTTCGC 1484239 28 100.0 32 ............................ AGAGGGTCGCGGGTGGTTTGTTGGCGGTATCT 1484179 28 100.0 32 ............................ ATTGCATCCAACGACTTGAAATCGCCTTTTTC 1484119 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGTAGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAGGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGATTAAGTTTATACGTTGAATGAGTTAACAATAAGGGCCATTTTAATAGATACATTAAAATGGCCCTTATTGTAATAAGTTGATTAATCAAGCGAAGGTTAAAATGTCACTATTACTTTTGAAGAGATTGTTTTATCCGCAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : TGATAAATGATTATCCTGTGTGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAACAATAAAATTAATCGGTGAGGCAGGATGAAACTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGACGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGTAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGCGAGATGATAGGCTGTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4321631-4321899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044076.1 Providencia stuartii strain FDAARGOS_645 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4321631 28 100.0 32 ............................ TGTTTATCATTTGGCGCAACAAACGCCGCGAG 4321691 28 100.0 32 ............................ TATTTCAACTTCCCACAACGCCATTGCAATGT 4321751 28 100.0 33 ............................ ACACACCAACATCAAGGCCGGCAATAACTGCAT 4321812 28 100.0 32 ............................ ATTAAACAGCACCCGAATTCCATCTGCATCAA 4321872 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGCTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAGCTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGTGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : ATGAACGTTTCCAAAACAAACGCATTAAGCAAATTGATGAAGAAAGTAAGTCAATTTACTACGAAAACTACGAACCCTGCGACGTTCCTGATTCACGTTGGATTGATATGCTTGTCGAAATGCCAAGTAATTTAATCTACAATCAGCGACAAGCAGAAGCAGAGCGATTAGCAAAAGAAGCAGCAAAGAGAGATGCTAAGCTTGAAGCTGCATCACAGATAGAGGACAATAAAAATTAATGCGCCATCTCGAGTAGTTGGCGCATGTGTATATTTATTCTTTAGGGTTTGAGCCAAATCGGTTGTTACCTGGGGTTCCATCAAGGCATGTAAACACAAAAATGACAAGACCACCAAAAGGTATAAATGTGAGCAAATACCACCAACCTGACTTATCTATGTCATGTAAGCGCCTAACAGTTACTGCAAGGCTAGGTATTAAAATAGCTACGCAATAAATCATCAGGAGGACTAGAGCTACGATCCCCAAACCATTTATAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 4335064-4335573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044076.1 Providencia stuartii strain FDAARGOS_645 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4335064 28 100.0 32 ............................ CACTGTTGTAACATATCGCGGCGCTGCTCTGC 4335124 28 100.0 32 ............................ ATGATTCATGTTGTCAGTTTCTCTGGCGGAAG 4335184 28 100.0 32 ............................ GTTATTCGTCGTTTATTTAAGTACCTCCCAGT 4335244 28 100.0 32 ............................ TGAAGGTCAAGCACAAGCGTTAAACGGTTACT 4335304 28 100.0 32 ............................ ATTTAATTGGGTATTATTTTTAATTAAGTTAA 4335364 28 100.0 33 ............................ AAATTCCCTTCCATGCCGAACGCCCTGCAAACT 4335425 28 96.4 32 ...........T................ AAGAGTATTAAATATCAACGTTCTAAGAATGG 4335485 28 96.4 33 ...........T................ TTTTGCGGACTCTTCTTTCAACTCATAATAATT 4335546 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAACTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGACTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AAATGAAACATCAACTTGATTTTATATATTTTTCAAGGTGACCATTTTGGCTTGTTTTATAAAATACAAAGGTCGCTTCTAATTCTTCATTTTCGTCCAAAGTCACCGATAATAAAGGCGAGGATTTATTAATCGACTTTGTAAATACAACTGGTTTATATGAGGTACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGCTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTCAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTGTGCGTTTAGGCTTCTTTTCCGTCCGTTAGATGGCCCATTATCCGGAGGAACGCCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCATTTATTATCAACGATAGCCCTTGGTCAACCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //