Array 1 164561-165386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZL010000006.1 Listeria farberi strain FSL L7-0083 NODE_6_length_170540_cov_146.192849, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 164561 36 100.0 30 .................................... CGTGCGTGTTCCGATCTCATACTTGCCAGC 164627 36 100.0 30 .................................... TAAGTTGTCTGCGAGCGCCGTTGTGGTAGG 164693 36 100.0 30 .................................... TCGCATCAGCTGAAATGTTACGATTTTTAT 164759 36 100.0 29 .................................... AGCATGAGTGGAAAACAAACTTATCGATA 164824 36 100.0 30 .................................... TTGTCGCTTTGCAAAAAATATTCAATCACA 164890 36 100.0 30 .................................... TGGCAGTCGCAACGATTTAATTGTGCCGTA 164956 36 100.0 30 .................................... AAAATAATAGTAAAACTAAAAGCAATGTTT 165022 36 100.0 30 .................................... CATACAGACTCGAAATTACGAAGATAACGA 165088 36 100.0 30 .................................... CAGCAATGCTAGATTTCATGTTTCGTACTT 165154 36 100.0 30 .................................... CGCTAATCCCTTTGTTTCCCGCAGTAGCAT 165220 36 100.0 30 .................................... GAACTTTGATGCGACCTTTCGCGTCTTTTT 165286 36 97.2 30 .........................A.......... AGAGAGGATGAACTCTAAATAATCGGAAAT 165352 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAATTGGATTTAGAGGAAGATGAAATTACGGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGATTTTCGCAAGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATATAGATTTCAAATGATCTTTGAAAACTAAATAGATTTTATATGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTACACCATTATGAAAGAGGGACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGCGAAGAGCAAAAGAATGATTAGGAATCTAAAAGTTTGAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCAATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAATTTTAACACCAGAAAAGTTGGTTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATACAGCACTTAAAATAAAAAGGAGAAACCTTATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACCGTACTACTAACAGGATGCTCCACCGCCGAAAAACAAAAATATACAGAAGCAACAGGGACAATAGAGCAAGTAGAAACGAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 301058-301735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZL010000001.1 Listeria farberi strain FSL L7-0083 NODE_1_length_1483358_cov_97.233217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 301058 29 100.0 35 ............................. TTGCTTGTTGAAAGTTTCTCTGCTCTTGCCTTAAC 301122 29 100.0 36 ............................. GAAGAATTTTACCTCACACAATCTGCGCAAAATTAA 301187 29 100.0 35 ............................. ATTGGTATTGCTTTTATTATTCAAAAAGTGAATCC 301251 29 100.0 36 ............................. AAAAACAATTAGACTTTATAACTAGGACAGCTGTGG 301316 29 100.0 37 ............................. TCAGCTAGGTAGCGTGCATCTGGACGTTGTAAACCAA 301382 29 100.0 37 ............................. CTCCATATTTTTTAGCTCGATTAGTAAATTGTTCAAA 301448 29 93.1 36 ..............A...G.......... GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 301513 29 93.1 36 ..........A.......G.......... GAAACACTTGTTTACGGTGATTACACGTTAGTAGAA 301578 29 93.1 36 ..............A...G.......... ATTCCCGACTTATTTAAAAGTAATACTTGTTGCATC 301643 29 89.7 35 ..............AC..G.......... TTGATTTTTCGAATATCTCGTAATGTCTCACTTAT 301707 29 86.2 0 ......A........CA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.9 36 GTTTTAGTTACTTATTGTAAAATGTAAAT # Left flank : GTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCGGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTACAAAACTCAAGAATCAAAGAAGTTATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATTGGACGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTGTTTTAAAGAATAAGTAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACTGGGAATCGACAGAAATTTGTAAGTGGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGATTTTAGATGTTTTTTGTTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TACCCTTCATATACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTATATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTAAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 316957-318148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZL010000001.1 Listeria farberi strain FSL L7-0083 NODE_1_length_1483358_cov_97.233217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 316957 29 100.0 37 ............................. AGTGTCTTATAGTAAGTAATTCTATTAAATGTATAGG 317023 29 100.0 35 ............................. CTCTTCATTGGTAAGTAATGTTACTAACTCTTCAC 317087 29 100.0 37 ............................. ATGAACGCGACGATACACAAACAACTAGTTGATTACC 317153 29 100.0 37 ............................. ATTAAAACACATAAAAACGATAGATTAGAGTATCCTA 317219 29 100.0 33 ............................. TTAGACGGGACTAACTCCGTCTTCTTAATCGCC 317281 29 100.0 35 ............................. AAAGTTTTTGCCATCTTAGTACTTACCTCTGTAGC 317345 29 100.0 36 ............................. GCAGGAGCTAGTCAAGAAGTAACTTACACTTCATCT 317410 29 100.0 34 ............................. AATTTTGGGAGAAAGTACATTTGGCAGACCTAGA 317473 29 100.0 34 ............................. GCTAATCATGAAAATGATTATGAGTTTGCTCGAG 317536 29 100.0 36 ............................. GGAATATAAGGAGTATGGCTATAGTAATATCCCTAA 317601 29 100.0 38 ............................. AATGGAAAAGACTATAACACAGTCAATGAACTGCTACA 317668 29 100.0 35 ............................. GAGGGAGGAGTCACTTTTAAAGAAGATCGGTATGT 317732 29 100.0 36 ............................. ATGGAAAATATTGCTGCATACGACAGCTACGGTATT 317797 29 100.0 35 ............................. AAACCTTGTATTTTAGACTGAATCCAACCACCCAT 317861 29 100.0 37 ............................. TTAGAAATGGTGCTATCTGGTGGTTTTGTTCCTGTTG 317927 29 100.0 37 ............................. TAGGCTGTCGCTAAATCTTGATGAGTGATATTATTTT 317993 29 100.0 34 ............................. TTTTTCAAAGTGTAAGCTGTTTTAGAATCCCAGT 318056 29 96.6 34 ............C................ AGTATAAGCACAGCAATTCAGACAGCTATAATCT 318119 29 93.1 0 .......................A....A | C [318142] ========== ====== ====== ====== ============================= ====================================== ================== 19 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGACAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTCTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : ATTCCTTTTAAAATCTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //