Array 1 99837-98951 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNE01000001.1 Nocardia rhizosphaerihabitans strain CGMCC 4.7329 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99836 29 100.0 32 ............................. CTCCATCACCCCGCCGTCCTTCGGCGGAACTG 99775 29 100.0 33 ............................. CTGGTGCCGGTGGCCATGGCCACAGTGTTCGCC 99713 29 100.0 32 ............................. GCCGCTGGAGGATGCCGGCGGTGATGCACAGG 99652 29 100.0 32 ............................. AAGGGCCAGACCGCCGCCTACGTCAAGACGAC 99591 29 100.0 32 ............................. TCGTGTGGGTCGTGGCGCACCAGCAGCGTGCG 99530 29 100.0 32 ............................. GGCATCGGCCTCCGCCTGGCCCAGCGCATGGA 99469 29 100.0 32 ............................. TTCATCAGGATGACGGCGACGGCCAGCCAGGC 99408 29 100.0 32 ............................. CGAAGCGCCTCCCGCTGTTGCTCGAGGTCCTC 99347 29 100.0 32 ............................. GGTGGAACACCCGAGCAGACCAACCACACCTA 99286 29 100.0 32 ............................. CGACCGACTCACGCAGACCTCCGAGCTTCTCG 99225 29 100.0 33 ............................. CAGCAGACGGCCCCGGTACCCGAGACGGGGTAC 99163 29 100.0 32 ............................. ACGACCACGGCGCGAACGTTCTTCCGCCGTCT 99102 29 100.0 32 ............................. TAGCTCGTAACTACAGAAGGCGTAGACGCGTA 99041 29 100.0 32 ............................. TTGAACCACGCAGCCAGGTCGGTCTTAGCCTT 98980 29 86.2 0 ....A.A................T..T.. | G [98959] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.1 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GACTCGTTGGTTCCTGGAGGTCAGCCCGGGTGTGTTCGTCGGTGTGGTCAGCGCGCGGGTGCGGGATCTTGCTTGGCAGCGTGTGATCGAGCTCTGCAAGGACGGCCGCGCGATCATGATCCACACCACCCGCGGCGAACAACGCATGGCGTTCAAGACCCACCGCCACGATTGGGAACCGATCGACATCGACGGCATCCATCTAATGCTCCGTCCCCACACCAGTGACGGCAGCGGTGGTAGCGCACGGCCAGGTTGGATCAAGGCGAGCCGATATCGCCGTGCCCATCAGTCGAAGCGTCAGCGGCCAGACAGCGACAACTGACCGTAGGTTGGGTGTTGTCGTCCCACAGAGCGAAAGGTCACGGTGAGCCGTTCGCGGTGTCGTGATCGGGTAGGTGTGGCGTCCCTTGCGAGCATGTGGGGGTCTAGGTGTGGGAGGACGATCGAAAGTGAATGAAAATCGGTTGATTGCTTCGTGAAGGCGCAGGTCAATTAGT # Right flank : GACAGCATGGTGAAACGCCCGAAGTCTCTCGAAGGTCGGGGTACGGGCTTGGCGTTGGCTGTGTGATCGGTCGAGGTCGACTGGTCCAACCGCACAGGGTCGGGTCCGCGCTGGCCGAGGACCTCTGGGTTGGTGAACTGAGATGTCAGGCGCGATCAGCGCGCCTTGATCACCGAAGGAACCCACGACGTGAACCATGGATCGAGAAGGTCAGGGGTTCGATTCCCCGTAGCTCCACAATATGCGCAGGTCAGGCCGGGTTCCGAGAACTCATCGGAACCCGGCCTGACTCTTTCCCCCTACTAAGTCACCACTAATTGGCGTGACGTCTACCCACTCGTGGAATCGGCCTGGTTGACACCCCACATGGCCGGATGACCTGGAGCGCGATGCACGCCGCCTCGACGAGATGTCGCTTCCGCCTGAAGACTGACCCTCTGATTCCGGGTGAATGCTGACCCACCCCGTGAACGATCATGAGGTGCTGAACGTGGAGGACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109835-109217 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNE01000001.1 Nocardia rhizosphaerihabitans strain CGMCC 4.7329 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================== ================== 109834 29 100.0 32 ............................. TGGGGTTTTGAGGCTGAGATCTGGTACCCGGT 109773 29 100.0 32 ............................. TTCGACGAAGTCATCGTCCGGGACCTGATCGG 109712 29 93.1 32 .......T............A........ TCGATTCGGTCTACATCCCGCCGGGTGTCGGG 109651 29 96.6 32 .........................A... TAGCGAAAGCCACGGCTGGTCAGGATGTTTCG 109590 29 96.6 32 ....G........................ GCGCAGGCGTTGACGACGACGGTGGAGGCGAT 109529 29 96.6 46 ........................T.... TGGGCGGCGAGCGCGGTCTCCTTCGGGGGAACCCCAGTCAATCAAT 109454 29 89.7 32 A............C...........A... GAGGCCTTCCGCTCGACCCAATACGCCCACTA 109393 29 86.2 32 A..G....T....C............... CCGATCCAGCGGCCCGACTCGAAGTTGACGCG 109332 29 89.7 58 .....T..............A...C.... GTGGATCCCCGGGACCTGTGGATCATGAACGAGTGCTCCCCGCGGCCGGCCAATCGGG 109245 29 72.4 0 C.T........TT.C.......GC..G.. | ========== ====== ====== ====== ============================= ========================================================== ================== 10 29 92.1 37 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CCTGCTGGTCACCGATCTGGCGCCGGTGGACCTGATTCTGCAGCGGATCGGCCGGCTGCACCGTCACCTGCGTTCGGGCCGCCCCACCCGGGTGAGCCGACCGCGCTGCTGGATCCGCGGCGCCCAATGGGGATCGATCCCCCCGAAGCTGGACAAGGGATGTGAAAAGGTCTACGGCCGAGCACGTTTGCTCCGCGCGGCCGCAGTCCTGACCGGTAGGCGCTCGTCGGGTGTCGATGTGCCCGCAGACATTCCGGGCCTGGTGGCGCACGCCTATGCCGAGGGTTTCACTGTTCCAGAGGGCTGGGCGGAGACGTTCGCAGACGCCGAGTCGGCGTGGGAGATTCACGTGGCTGATCAGCGCAAACGTGCCGGTGACTATCTGCTGGGCCCGCCGCACACCGAGAACTCGACCATTCGTGATTGGCTCGTGGCCGGGGTACGCGACGACGCGGACGGTGTCGGCGGCCAAGCGCTGGTCCGTGGAGCAAGCACCCCGG # Right flank : GAAGCCAGTTCTCCCCGCATGAGCGGAACGGTTCCAGCGCAACGCCTTTGATGTCGTTGCCGTTCGTCCCGCGCGGGGATGGGTCGAGCCAGGGCGACGACCTCAAGGTCGACACGTGCTGCCCGTGGGCATGAGGAAGTGCGGTAGCGGGTTTTCGACGAGTTCCGCAGCAGGAGTGTAAATGTCGGTGGTTGTGGGTATGGTCGGCAGTCGCGTTGATTGGGCGGGTTCGCGAAGGGGGAGTTGTGGTTTCGTTTGCAATGGCTGGCTCGGTATGGGACCAGTGGTTGCCGCAGGACGCTCGAATGCTGCTGGCTAACGGCCTGCCTGGCGTCGCGACGGTCGCGCGGTGGCTGCCGGCGGGTCGCCACCCCATGACACGGCACCGCTCAGCGGCCGGTGCATGCTCTGCGCCCCAGCGTATTTGCGACCCGTCGTGGCACTGTGGCTGACCCGTGGGGCAAGCGGTGGGGACTGCCGCGGCCATACCTGCTGAAGTG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 114172-112372 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNE01000001.1 Nocardia rhizosphaerihabitans strain CGMCC 4.7329 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114171 29 100.0 32 ............................. CAGGTCGCGACACCGTCTTCGCGGGCCCAGTC 114110 29 100.0 32 ............................. GCGTTCCGCGGCACCGCCGCAGACCTGGACCG 114049 29 100.0 32 ............................. GACGAAGGCGAATACGTCCTCATCACCCGCGA 113988 29 100.0 32 ............................. AAAGGGAGTCTGCCGAACCCGAATGACCTGAT 113927 29 100.0 32 ............................. TTGCGACGTGACTCGGTGACTGGGTTACGCCG 113866 29 100.0 32 ............................. TGGCGAACCCTCCGGCGCAGTTGTGCTCCCGC 113805 29 100.0 32 ............................. GGAGCTGTACTTGAGTTCTCGTGAACCCGTGA 113744 29 100.0 32 ............................. CGACTGGCGGCGCTGGAAATCGCCGAGTGGTC 113683 29 100.0 32 ............................. CGAATTCGCCCGGCTTGCGTCAAACCATGTGG 113622 29 100.0 32 ............................. GCGCCGACCTTGCCGGTATCGGTGACCGGCTG 113561 29 100.0 32 ............................. GGATCGCGAAGAAGGAGAACACGATGAACATA 113500 29 100.0 32 ............................. CAGATCCGCGTCAGCCGCGCCGAACTCCTCAA 113439 29 100.0 33 ............................. CGGTGAACGTGAATCGTCCCAGCGTAACGCGCG 113377 29 100.0 32 ............................. CCGGTACCGCCGGTCGACTCGAAATGCTCACC 113316 29 100.0 32 ............................. GCGAGCTACGCCATCGACTTTGCACACTGCGT 113255 29 100.0 32 ............................. GCGACCATCGCTCGCACCACACAGATGATGAC 113194 29 100.0 32 ............................. AGGCCGATGATGTAGGCCCGGCGCAGCACGTT 113133 29 100.0 32 ............................. GACGCTTCAGCCCCTTTTCGCGTTTGTGTGTG 113072 29 100.0 32 ............................. TCGAAGTCGCCGGCGGGCAGCGAGCGGTGTTC 113011 29 100.0 32 ............................. GAGCCGCCTGCATCGGTGCACCGTGGATTCGC 112950 29 96.6 32 .................A........... GTCGAGCGCGAGAACCTCGACGTCCTCGAGGA 112889 29 100.0 33 ............................. TACAGCGGCGAGGACCAGTCCGACAGCTACGGG 112827 29 100.0 32 ............................. AAGGATCTTGAGGATTCGCAGCGCGACCTGAA 112766 29 100.0 32 ............................. CTCGGGATTCTGAACGGCGACTCGGGTATCAC 112705 29 96.6 32 ....C........................ ACCTTGGGCCTGCTGTAGGCCTTGCCGGGGTT C [112702] 112643 29 100.0 32 ............................. GGCACCGGCGTCATCAAGACGGACGACGGCAC 112582 29 100.0 32 ............................. CTGTACGAGGTGCAGGTGGCGTGGACGAGCCC 112521 29 100.0 32 ............................. AGCTCGGTTTCGAATCGCGATGCCATGCCAGC 112460 29 96.6 32 .......T..................... TGAATAACGATGGCTGGACGTCGCCCCGGCCC 112399 28 93.1 0 ........T...........-........ | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CAGCCTCGCATTTGCGGTGACGGTCCCGCCAGGTTCTTCGGTGTTGTGCTCCATGCTCTTCGGCACTCGCGTCTAAGGTCTCACCAGGTTTCACGGTGCCTCGGATGGCTGTGGCTACGGTTGTTCTGACGTCGACCGTGGGTTGCGGTGGCCGGCGAGCACCGCATGGACGCGATTCTTCACTCGTTTGCGTGGAGAAGTGCGTGACCGTAGGGCCCTCCTCGCAGCCTGGCCGCCTGAGGGGGTGAGGAACGATCGTGCCGAAGGCTCTGGCGTTGACGCCTGTCGGGCTGTAACTACCGACCACCTGACGCGGATGCTTACCTGCGGCGACGGGAGGAAGACAGTTGAACCAAGGTTGTTAGGCCGTTTCCGGGTCCCGCTGACGCTACGGTGTAGGGGGAGGGTTAGGGACGGGATGCAGTCGCCAGGCTAGCGAGGAGACTGATCGAAAGTGAAAAGATTTCGCTGTTTGGCTTGTAAACATACAGGTCGGTTAG # Right flank : CGCCCCACCTTCGTGATCCAGACGAGGCGCTCCGGGTGGTAGCGGGTTTCCGCCGAATTTTGCTGGGGGAGTGTAATTGTCAGTGGGCGTGGGTATGGTCGGCAGTCGCGTTGGTCGGGTGGGTTCGCGAAAGGGGGGAGTAGTGGTTTCGTCAGCGGTGATGTCTGCGTGGGCAAAGAGCGATCGTGCTGGAGGCAGTCTGTCGTTGTTTCGGCATTTGGCTGATTCGTCGGCGGTGGCTGGTCTGGTATGGGATCACTGGCTGCCGGAACATGTTCGGGCCCTGTTGGCTGATGGTCTGCCCGGGGGACTGGCAGACGCGCGAATCTTGTTCTGCTGGTTGGCTGGCTTGCATGACGTCGGCAAGCTGACTCCGTCCTTCGCGTGTCAAGTGCCAGAGCTGTTCGATCGCATGCACGATCACGGTTTGCCTGCAGTGGGGATGCCGGTGGACCGGAAGTTGTTGCCGCATGGACTGGCCGGCCAAATAGTTCTGGAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 124941-124670 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNE01000001.1 Nocardia rhizosphaerihabitans strain CGMCC 4.7329 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124940 29 100.0 32 ............................. ATGGATTACGTGGCGCAGCGCCTCGCTGAGAT 124879 29 96.6 32 .............A............... GCGATCGTAGCCAGAACTATGGCGGGCGGTCT 124818 29 100.0 32 ............................. CGGGTGGTCTGTAGTAACCCATGTGGCGAAAT 124757 29 100.0 32 ............................. TGCCATGGTCGAACCCTTCCTCCGATCCCAGC 124696 27 86.2 0 ............--......C.......T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CGACAGGTGGGCAACGCTGGCGGCCGCTACCCGCTCCGATATCGGTACCCATGCGCTGGCCAGCCTCGATACCGGGCTGGCCGACTTCGCCGCGGTGCGCATGCGGCTGGCCGCCGCGGTCGAGTCGGCGCCGGACCACCTTGGTCCGGGCTCGCTCGTCCCGTGGTCCGAAGCCAGTACAGGTCGGCTAGGCAACTTTGCCGCTCGATGTCCGCGAGGAGGATCATGCAAGCTTCACTCGCGTGCAATTCCAAAGCGCCCTCACACCAGGATCCGCTGGGCCCTGGCCCAATGGCTTGGCCGTTGTCTGCGGGCGATGGACAGTCTGAGTCCTCGCAGCATCCGACAGACCAGCGAACCTGACGAGATGCAGGTGGTTGGCAGCTGCGGGATCTGCAGTGAGGTGGCGGAAGGGCTGAACTATGTTGGAGGCTGATGGTGGTCGGTGGAAAGTGAATGTAAATCGGGTGTTTGGCGTGCAAACCCGCAGGTGAGTTAGT # Right flank : ATGGTGGCTGTTCGAGTGGAGGCCGAGTTCGCGTGCGAAGTGTCTTCGAGAACGCACATCTGTCCTCAGGCTATGGTTTCGGTGATGCTCTCGTCGTCTTGCTGGCGACTCGAGGGGCCGCAGTGGTCTACCCCGCCTCACCGTCGGGCTCCTGTGGGTGGTGGCTCGAACTGCGGGGCTGACCATCCTGGCAGAACTCGACGTCGATCCAGAGGCCTTCTACGACCTGGCCGGCGCCTACAGTCTCGCCAGCCGGATCGCGACGACCGCATTAACCAACACGTACAAGGCGATTCACGACGCGACCTTGATGAGCGGAAACGACAACAGCGGCACACTGTGGGCCAGGGCTACTGGGCCTCGGGTATCGAAGCTCTTGTCACGTCCGGCAAAGCGACCGATGTCCTGGCCAAAGATGGCCGCACTGACCCGCCAGAGCGGTGCCAATCACGACCGGTCCGAGAACGCCGAGGACTACAACATCGGCAAACAGCTGCCGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //