Array 1 653971-653428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJQ010000001.1 Listeria marthii strain FSL W9-0602 NODE_1_length_908030_cov_82.731794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 653970 29 100.0 34 ............................. TTGAAACCAGATGCATTATTTACTCCTGTCATTT 653907 29 100.0 36 ............................. CTAAAAACTGAAATGATCATCGATTTATCAGATATG 653842 29 100.0 34 ............................. TATCTAAGTTCTGGTGAATAAATAGACATATATT 653779 29 100.0 36 ............................. CCTTTTATTAGCTTTATCTACAAGCGCAGGAACACC 653714 29 100.0 36 ............................. GTGTAATACAATAGGCGTGTAAGTACGAAGAGTTGC 653649 29 100.0 35 ............................. ATCGTTGGGGGATTCTGAGTACAGTCGGCGGACTG 653585 29 100.0 34 ............................. TTTATTTAGTTCCTCCTTCTCATATTCCAAACAT 653522 29 96.6 37 ..............T.............. AGTTTAGATGCTTTGCTAAATCAGAAAGAGTTCATTA 653456 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTTTTAGATACTTAATGTGAAATGTAAAT # Left flank : GCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTTGCGTTTGGTTATCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAAGTGGGAGTGGTTGGGATTAGGGAAGTTTGGTGGTTTTTGGTTTTAAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TAATGTAAACTTTCTTGTGGGATTCCAGCTGTTTTCGGTTTTAAAGTACAAGGAATGACATTATAAATGTGAAAAGAAAAAATCCAACTATATCCACACCCAAATCATCCATATAATCAAAAAAAGCGTGACTGCCAAACTAGCAGTTACGCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTCCTCTTCGGAAATAAAATTATATGCTTCCACTTCTCCTAAATTCTCAAAATCCGAAAGAGTAGCTCCCGTTTCTTTCAAATCTTCATTAAATTTCCCGTAGCTCATACTAATTATCGAACTTAGTTTTTCACTGTCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCCTTCTCAAGCGCGATATAATTCTCAATAGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAGACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 483074-484626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJQ010000004.1 Listeria marthii strain FSL W9-0602 NODE_4_length_490008_cov_102.904701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 483074 36 100.0 30 .................................... AATATATTAAAGACTACGGAAACGGTAGCT 483140 36 100.0 30 .................................... CTGCAGTAAGAGCTTCAATTGTATATGCTT 483206 36 100.0 30 .................................... TCATTCTTTTTCAAAAGTTGGTGGGCAAGT 483272 36 100.0 30 .................................... CTGATTCCCGGATCATTGACGCGCCACCTT 483338 36 100.0 30 .................................... AATACTTTAAGCGTACAGGCGCAGTAACCG 483404 36 100.0 30 .................................... TGTAATTCGTTGACATCAAGAAAATATGCC 483470 36 100.0 30 .................................... TGCGGCAGGTGCTCTTGATGACGTCGTGCA 483536 36 100.0 30 .................................... TAAGCTATAGATATCCTCAACTACAAAGCG 483602 36 100.0 30 .................................... TGTATTGTAAACCAGCTAGACACTCCGAGA 483668 36 100.0 30 .................................... TAAGAGAGTATTTTGAAAGCCAAAACAGGT 483734 36 100.0 30 .................................... CAGGCTATGAGAAGACCTATGACATTCTGA 483800 36 100.0 30 .................................... TAGTTAGAACCCTGCTCGACACCTGCGTTA 483866 36 100.0 30 .................................... TACTATCCAACATATCCTGTATATATGTGC 483932 36 100.0 30 .................................... CACGACTAAATTAATCCCTTTCGTTCTCTT 483998 36 100.0 30 .................................... AATATGTGGGGACTATTTGGGGACGTGTGG 484064 36 100.0 30 .................................... ACAATAGTATTAATGCCACAAAAAACAAGT 484130 36 100.0 30 .................................... CGAAAGTGATTTTGTTCTTAGTGATAGTGA 484196 36 100.0 30 .................................... TGCGGCATTGACGTTAATAACGGCACTTGT 484262 36 100.0 30 .................................... CCGTAGTTATAAAACCGCTCTAGACTTCTA 484328 36 100.0 30 .................................... CACTTCGTATTTATTTGCGACTGGTGCTAT 484394 36 100.0 30 .................................... TAATCCGTTTGGTTGTTTAGCAATTAATCC 484460 36 100.0 30 .................................... TGAGTCTGGAAAGCACTCAATGATGAGTCG 484526 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 484591 36 80.6 0 ......A......A......A..G........T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTGAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTACATGTGGAAAATGGTGTTTAAGGACAGGTGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATCGAAAAAAATCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTCGATAGCCTTTAACAAGAACTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTGAGCGACAGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //