Array 1 131-1419 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOSP01000051.1 Nitrosomonas aestuarii strain Nm69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 131 28 100.0 32 ............................ TAAACCATTGCGCTCGGACGATAAACGACTAT 191 28 100.0 32 ............................ TTTGTAATACACAGTCAACACTTTTGATTGCA 251 28 100.0 33 ............................ CTTTTAAAAATAGAAGCGTCATTGGAATATCGT 312 28 100.0 32 ............................ TACCATCCGCGCCAGTTCTAGCACGTTTAATT 372 28 100.0 32 ............................ TCAATGCCTAAAGCCGCAAGGTCAGCATTGCT 432 28 100.0 32 ............................ TGTGTCAGTCTCAGCCAAGTCTTAGGCATCGC 492 28 100.0 32 ............................ GTGATGATGCTGCCGAAAGAACCGGTAATATT 552 28 100.0 32 ............................ AATAGGCGGTGATCTGTACAGTAGACCGAGCA 612 28 100.0 32 ............................ ATTCAGCGCCGCAGGAAAAGGGCTTGGAAAAT 672 28 100.0 32 ............................ AAGAGACAGGCCTGTGCGTTACTGCTGTGAAT 732 28 100.0 32 ............................ AGTGCTACATCAGCAGCCGTCGATACGCCGTC 792 28 100.0 32 ............................ GCAACAACATTGCCGAGTTATACCACATTTAA 852 28 100.0 32 ............................ AACATGTTTTTAAGCGCCTCGGAAGCGGTCAC 912 28 100.0 32 ............................ TTGTAACTGTACCCTCCGGGGCACTTCGTGGC 972 28 100.0 32 ............................ AACCTGAGTGAAGCCAACCTGAGGGGAGCCCT 1032 28 100.0 32 ............................ TTCAATTCGTCGTCCGGGGTATAATCGCCTGC 1092 28 100.0 32 ............................ ATGACAACCAAATGCCCTGGTTCGATCTTGAC 1152 28 100.0 32 ............................ ACTCGGCTGGGCTGGGTGCGCGTGGATGAAAA 1212 28 100.0 32 ............................ GGCATTGTCGGCATGACTGAAATGAACGGGCG 1272 28 100.0 32 ............................ TATAGGCTGATCACCTTCTTGTATATCGATGC 1332 28 100.0 32 ............................ TGCACAGACTCATCCAGCAGTGAGCCGAGTTC 1392 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTCCTGTGTAGTCATCGCTCATCCTCCTTTGAAAATGCCCGAGGATAAACAGATCAGATTCTAATTTATAGATGGCGGGGTTGGACGCTTACGAAACACTGACATTAATAACCGGATAGCAGACGCAAG # Right flank : ATGTTGTTTTAGAAAATGGTTGTTTAACGAGACAGCCCTGTTTATCCATTAAAACAGTCTTAAAGCTGTTCCGTTTTGTTGCTTCACAGATCAGAGCACCACAATCCATTGTCATGATTAATAAATAAGACAGTTATCAAATAAGGTTTGCATTATACAGTATAAACATATACAGTAATGTATATGAAACAAGATTCTATGGTACGCACACAAGTTTATCTATCCAAGGAGCAAGAGCAAGCACTCAAATCTCTTGCCCTTACCTCTGGAACACGCCAAAGCGAACTTATTCGTGAAGCGGTTGATTTATTGCTGTCAGAAAAGAATGCCCTGCAGGGCCAGTGGAAACAGGCCCTGCATGAAATGAAAGGTATATGGGCAGATGACAAAACCGCCAAGCAGCGTATGCAAATGATTCGTGAGGAGTTCGATCGTTAAAAAATGGCGCATTACCTGATAGATACCTGCATCTTAATTGACTTTTTTCGTGGTAATGAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2829-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOSP01000024.1 Nitrosomonas aestuarii strain Nm69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2828 28 100.0 33 ............................ CGCGTCATCCAGACTAGCAGTACGTACCCCTCT 2767 28 100.0 32 ............................ TAGCATCGAACTAGCCGGGGCAGCCGCATCAA 2707 28 100.0 32 ............................ ACCAAGAAATGTCACCTAAGATCAATCATCCA 2647 28 100.0 32 ............................ CGCCACAGTATGAACTGCGGGTAGTCTGTCAG 2587 28 100.0 32 ............................ TCGCCGAATAAATCAACGTTAACCAACTGCAG 2527 28 100.0 32 ............................ TTACCTTGCGATTTTCGAAAAGCTTTCCAGGC 2467 28 100.0 32 ............................ ATAAACATAGTTACCAGTTCAGTGCGCCCGTT 2407 28 100.0 32 ............................ AGGAGATCGAAGCGAAACAGACGCCGCAATCC 2347 28 100.0 32 ............................ ATTCTTTGTTAACGCTTCCCTGCACGCTTCCC 2287 28 100.0 32 ............................ TAACTGCTCGATCATCCGCACCGGCAAATAGT 2227 28 100.0 32 ............................ ACGACATGGGACCACGTAGCCGAAGGCGGTTC 2167 28 100.0 32 ............................ ACTGTGGCGGCGCTTTGCAACGACGCAACCAG 2107 28 100.0 32 ............................ TATCTGCTGGGGCGGTCCGGGTACTTCTGGGT 2047 28 100.0 32 ............................ TTCTACAGCTTCTGGCGCGGTTTCCTCACCCG 1987 28 100.0 32 ............................ TGTAGTATGTGTTCCGCTAACTGGTCACTTAT 1927 28 100.0 32 ............................ TGGCGAAATTGAAGCATTACAAAACCTTACGC 1867 28 100.0 32 ............................ CCAGTTGACGCACTGCTGCGCGCTCAAGGGTA 1807 28 100.0 32 ............................ ATGTTAAATATATCGTTCGCACCCGAAATATT 1747 28 100.0 32 ............................ GATAACCACTTTATCGATTGAGTTATTCTCTA 1687 28 100.0 32 ............................ TGTAATATGTGTTCTGCTAGCTGGTCGCTTAT 1627 28 100.0 32 ............................ GATAGAGATAGATTCTGACGGTAATATTTTTA 1567 28 100.0 32 ............................ ATTTGCCGCATTTAAAAGTCACTGTTCCGGTA 1507 28 100.0 33 ............................ AGGACAGTGGGCGCAATATCTCCGCCCCGCGCT 1446 28 100.0 32 ............................ TATCAGCAGCCCTACAGAATGGGGTCCGGTCA 1386 28 100.0 32 ............................ TTAAAATGCTAAAGAGTCTTCAATTTGTAAAA 1326 28 100.0 32 ............................ CACGCCGGTCGCCAACGATTAAACACCCATAC 1266 28 100.0 32 ............................ CTAAACTGAACGGGCAAACTATTAACGTATCG 1206 28 100.0 32 ............................ ATCAATCGCGGCGGCTATAGGCGTATCCGCAG 1146 28 100.0 32 ............................ ATCGGATTAGGCCGGGGTTTAACTAACGTTGC 1086 28 100.0 32 ............................ AAATTAGTTTCCCTAAAAAGACGTCTGCATTG 1026 28 100.0 32 ............................ TGCTTTAATAACCAAGCGAATGACTCCACTGT 966 28 100.0 32 ............................ TGCACCGACTCATCCAACAGTGAGCCGAGTTC 906 28 100.0 32 ............................ GTTATAAGCGCCCTGATTCGGCAAAGCACACC 846 28 100.0 32 ............................ ACGCTCAAATAATATACGCTCAACAACTTCCT 786 28 100.0 32 ............................ ACCATCAATCCGCGTGTACCAGAAGTAACAAA 726 28 100.0 32 ............................ GATCACCAACCAATCCATACGGACATTCTTTC 666 28 100.0 32 ............................ TTGCTGCACTGGGTGGTGCGTATGGTGGCCTT 606 28 100.0 32 ............................ TACCCTTGCATCTGAGTACGTCATAGCGTAAA 546 28 100.0 32 ............................ AGCACCGCCGGTCAATGAAGTTACCCAATATT 486 28 100.0 32 ............................ TTCCTCATCTCCAAACCGGTAAACAATCTCAT 426 28 100.0 32 ............................ TGATGTAGGCGATCATCGGGTAGTGGTGCATA 366 28 100.0 32 ............................ CGAAAAGCTCAGTTGCTAGAACGTAAGCTTTT 306 28 100.0 32 ............................ ATTTAGGCAACAACCAGACCTTGTAATCAACA 246 28 100.0 32 ............................ TTCTTCCCGTATAGCATTCACGAAACTTGGTT 186 28 100.0 32 ............................ GCCTTCGATCAAGTCACTTTCTTTCACGTTTG 126 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTATCGATTCCTTTGGGTTTAGATGGCTTAAACATATTTGTAAAATATTAAAATAGACTGATATTCTAACTAGATTATTATAATGCCAGGATCATCGTGAGTCGAAGTTAAAGACGACCTTGCAACAATTGTGCATGATTCGGGTTGCCAATAGAATTCTGAATTCATCGGCTAACAAGGTTCCACTTGGTGCCGAAAATAATCTGCGCGTGTTTAAAATCCTGTATATGGATATCGATTTAACGTGTTCGGCATTAAACCTCAATGTACTCGGACTTGGCAAAGAAGATCTGAGCGTGATTAACATGCAAAACTGTGCTTGAATTTTATAACTACTCATGTAGTAGACAGCTTTGCATGGTGTCTGACCATTATTTTTTTGTTATTTAACAATCTAAACAAAAACAGTAAGTTATATCATTACATAAAAAGATTGGTTATTTCCTTAATATATTGTTAAGTATCTGTTATAGATTATTTTTTCCTATGTAATCGTAGG # Right flank : ACACTGTATGCGTCCAGTACTACCGTCTAGAATTTTTCTCGTTTTAATGCTTCGATAAATTCCGGTGCTAGTGGTAACAATTCATCGATACGGCTGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //