Array 1 111025-108126 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIF01000007.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N46827 N46827_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111024 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 110963 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 110902 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 110841 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 110780 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 110719 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 110658 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 110597 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 110536 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 110475 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 110414 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 110353 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 110292 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 110231 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 110170 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 110109 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 110048 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 109987 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 109926 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 109865 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 109804 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 109743 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 109682 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 109621 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 109560 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 109499 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 109438 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 109377 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 109316 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 109255 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 109194 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 109133 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 109072 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 109010 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 108949 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 108888 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 108827 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 108766 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 108705 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 108644 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 108583 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 108521 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 108460 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 108399 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 108338 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 108277 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 108216 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 108155 29 100.0 0 ............................. | A [108128] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 496125-497922 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHIF01000008.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N46827 N46827_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 496125 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 496186 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 496247 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 496308 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 496369 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 496430 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 496491 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 496552 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 496613 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 496674 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 496735 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 496796 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 496857 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 496918 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 496979 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 497040 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 497101 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 497162 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 497223 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 497284 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 497345 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 497406 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 497467 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 497528 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 497589 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 497650 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 497711 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 497772 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 497833 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 497894 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : ATTTGCGTCAGACTACCGACAGGGGCTGGTATGTGTTCCCCGCGCCAGCGGGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //