Array 1 1821465-1820950 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBKY01000001.1 Nocardiopsis sp. Huas11 Ga0236289_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================== ================== 1821464 25 100.0 36 ......................... CCCGCTTGCGCGGACTTGACAAACAGGCCATACTGC 1821403 25 100.0 36 ......................... CCCGCTCAGGCGGCGGGCGCGGCCGGCGGGCGGCCA 1821342 25 100.0 36 ......................... CCCGGCCCGCGAAGCAGCGAAGCTGACCAAGACCCA 1821281 25 100.0 36 ......................... CCCGCGGTGGATGGAGTCCGGGGGGAGCGTCGTCTC 1821220 25 100.0 36 ......................... TCCAGCCTCGGCGGTGCGTATCGTGCGCACACGGGC 1821159 24 92.0 37 ..........T..........-... TCCGATCCACGAGTGTGACGGCGTGGAGTTCCTGGAC 1821098 25 84.0 33 ..T............A...C.T... CCCCGACGGACGCACCGATTGCGCCACGTGCGG 1821038 25 96.0 36 ..........T.............. GCCGGGCTACCCGAAGTCCCAGGACTCCGCGACTAA C [1821029] 1820976 25 92.0 0 .......................CC | C,C [1820955,1820958] ========== ====== ====== ====== ========================= ===================================== ================== 9 25 96.0 36 CTCGTCCCCGCGCCTGCGGGGGTAG # Left flank : CGTGACATCAAATGGCTCCTGCTGCCCGAGGACGAGGAACTGATCGACCGCGACCTGAGCGGGCTGTGGGACGAGAAGCAAGGTGTGGTCGAGGGCGGCGTCAACTGGGGTGAGGAGATCTTCGACGAGGGCGGCTTCATCGCCGTCATCGGCCCCGAAACTCCGCAGGCTCCCACAGAGGGCACGGCTGGGGGGAACCCGCAATGACGGTCGTGGTGCTCATCGCCGCTCCGGAGGGGCTTCGGGGCCACCTGACACGGTGGATGGTCGAGACCGCCCCCGGCATCTTCATCGGTACCCCCGGAAAGCGCGTCAGGGACCGATTCTGGGAAGTCCTCGCCGAACGTATCGGGGACGGCCAGGCCGTCATGGCCGAGCCCGCCAAGAACGAACAGGGGTGGGCTGTCCGGACAGCAGGGAGGGATCGCTGGAAACCGGTGGACTTTGACGGAGTGATGCTCATGGCCCGACCGCGCCGATAAACGTGCAGGTCAAAAAAC # Right flank : GCCGCCACGGCCAGCCGGTTCTTCAGGCGTCAGGTCGCCGAACGATCCGTCAGGAAGATGGCTGTGTTGGGGCGTATCGTCCCGGTGGTCAGTGGTCGCCCGGCCCGGTACAGGCTCGGTGACATTATGGATGTCCTCATCGCCCCACGGAAGGCCACAGCTTGAACGTAGCGATCATCGGAGCGAGCGCGGGTATCGGCGGCGCTCTCCTGGCCTTCACCGCCGCGTTCGGGGTCCAGTTCGTCGCGGGACGCCAGAAGCACAAGGAACACCTCGCCCGACTCGGGGGCCAGTTCCTCACCCACGGGGCCATGTACGCGGACGCGCTCCACCATGCCTTCAAGAGCCGAGACCAAAATGAGGCTCTGACCCCGGCGTTCCAGACTCCGTACTACAAGGAGACCATCGAGGCAGCCACGGAACTCTCCCTGCTTGGTGGACGACGTGTCGCCTTCCAGGTCCAAGTCGTCATGGGTGCAATGAGCAGTCTGACCCTCGTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCCTGCGGGGGTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1830943-1833836 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBKY01000001.1 Nocardiopsis sp. Huas11 Ga0236289_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1830943 28 100.0 33 ............................ GAGCGCAGCGAGCAAGACATGCGCCTGGAACGC 1831004 28 100.0 32 ............................ TGACGGGCTCGAGCAGGAAGGCGGGCACGACC 1831064 28 100.0 33 ............................ CCGGGCGGGGGCTTTTTTGTGCCCTGACCCCCG 1831125 28 100.0 33 ............................ CCGACTGCATCTGAGCGACTCAGGACTGAGGAC 1831186 28 100.0 33 ............................ CCGCCGCCTCCTGTGGAAGCTCTCCAGCGAGAA 1831247 28 100.0 33 ............................ CCTCACCAACCGAGTTCGCAAGGTTTAGGGGTC 1831308 28 100.0 34 ............................ GGTGTGGGACATCTGGCAGCGCAACCAGTGGGAC 1831370 28 100.0 33 ............................ CCACGCCATACGGGTGCACCGGGGTGAAACGGT 1831431 28 100.0 33 ............................ CGGCTCCTACCAGGTCGAGCTGATCCTGCGCTC 1831492 28 100.0 33 ............................ CTTCGCGCCGTGGCGCAGGGCACCTGTCGAGAT 1831553 28 100.0 33 ............................ CGCCTGAGTGAGCACATCGACCGGGTAGGTGTT 1831614 28 100.0 33 ............................ CCAGCGCCGCATCAGGCTCCGCATGCAGTGGAA 1831675 28 100.0 33 ............................ GGCGGGGGCACTTTGGGGCTAGTTGTAGGTGAT 1831736 28 100.0 33 ............................ GCGACCTCCCACGCCTCAATCTCGTCGGTGAGA 1831797 28 100.0 33 ............................ GTCGAGCGCCAGGCCCTCGATGACCTCGGACAG 1831858 28 100.0 33 ............................ CTTGCATTGGCCCTGGCCAACACCAAACCAGGA 1831919 28 100.0 33 ............................ AGCAGGGACGAGTCCAGCGAGGACACGTTCGCG 1831980 28 100.0 33 ............................ GCCGCCCGCAGCCTCGCCATCTGCGAGGCCATC 1832041 28 100.0 33 ............................ TCGTCTTCGCTGCTGACGAAGGACAACACTCAT 1832102 28 100.0 33 ............................ GGTGCCCGCCGTGATTGCCACCCGCGACGCGCA 1832163 28 100.0 33 ............................ GCGGGGCCCCCAGTCCTCCTCGACCTGGCGGGC 1832224 28 100.0 33 ............................ CTTGAGTTCCGGGTCGTCGACGAGGTTGCCGAC 1832285 28 100.0 33 ............................ GTGCGGGATGGCCTCTACGCAGTCGTGCAGGTA 1832346 28 100.0 34 ............................ GTTCCGACCCGCGCGTCCGGTGCGGCCGACCGGG 1832408 28 100.0 33 ............................ CGTGGGCGTGCCCGAGGAACTGCTGCTCCACCG 1832469 28 100.0 33 ............................ CGTGGGCGTGCCCGAGGAACTGCTGCTCCACCG 1832530 28 100.0 33 ............................ CCGGTCAATGATCCGATCGCCGAGGGTGCGCAG 1832591 28 100.0 33 ............................ TGGCCACGGGAACAGGTGACGAGACGGCGGGGC 1832652 28 100.0 33 ............................ CCGTATCCGTACGTGGCGGCAACCGTGCGGGCG 1832713 28 100.0 33 ............................ GTACAAGACCACGAACTTCTTCGGCCAGGAGGT 1832774 28 100.0 33 ............................ GGCGGCCGTACCCAGGGCCGCCTGTGCGGCGCG 1832835 28 100.0 33 ............................ GCGGTCGCGTCGTTGGCGTCGCTCGTCGACCAG 1832896 28 100.0 34 ............................ CGCGGACCTGCCGGTGCTGGACTGGACCGTCAGC 1832958 28 100.0 33 ............................ CTTCCTCCAGGAGCTCCACGAGCTCACCCCAGA 1833019 28 100.0 33 ............................ CACGATCGCGGTCGTGGACACCCCGCAGGCGGA 1833080 28 100.0 33 ............................ GGTGCCGGCCTTTTTCGCACCCCCCCACACACC 1833141 28 100.0 33 ............................ TCGCCTTTGCGATGATCTGGTCTCGAATGTCCG 1833202 28 100.0 33 ............................ CCCGCTCCGCTGCGGCCACCAGCTCCTCACGCG 1833263 28 100.0 33 ............................ GCGGTCGGACTGGTCACCCCCCGCATCAGCCCG 1833324 28 96.4 33 .................A.......... CCGGCCACCCGGTGCCCGTCCGACGTCCGCCCC 1833385 28 100.0 33 ............................ GCCGAGCGCGTTCACGGCGGTGTCTCCGTGGAT 1833446 28 100.0 33 ............................ GCCCTCCGGTGCGTCCTGGGTGGTGGGGTCGAA 1833507 28 89.3 33 ...........G.........A...T.. GCGCGGGTGTGGCTCACCGCGGCCCTCCCTGGT 1833568 28 89.3 29 ...A.................A...T.. TCGGCCGGAGGCCCGTAGTGGTGACCAGG 1833625 28 85.7 33 ..T...........T......A...T.. GGACGTGTTCGACCTCGACGCCGTAGAGAAGGA 1833686 28 82.1 33 ..........TG..T..A.......T.. GGGGTGGTTCTCCAACCCGGGGGATACCACCGA C [1833688] 1833748 28 82.1 33 TC.........G..T..........T.. AGGGCCCCGCCAGCCCCTGACTGCCCGCTCCCT 1833809 28 85.7 0 T........A.G..T............. | ========== ====== ====== ====== ============================ ================================== ================== 48 28 98.1 33 CTCGTCCCCGCACCCGCGGGGGTAGCCC # Left flank : GAGTGCCTGGAATGCGGGGGTGGCCTTGCCGCAGTCGTGCATGGCGCACAGCCACATGAAGAACCTTTTGCCCTGACCGCCGGAAATGCGGCCTAGGAGGCTCCGTGTCCTGGGTGCTAGGTAGTGTTCCCAGAGCTGCTCGGCCACGGCCGCGCTGTCGAGTAGGTGACTCAACAGGAGGTTGATTTTTCCGCCGCCGTTTTTGCGCGATTTGCCCCAGAGTGCGCCGAGGTGGGACTGGGTTTCCTTACTGAGGCCGAGCTCGCGGAAGATGGTTTCCACCGGCGGGTCTGGCTGTTGTCGACGAACGCACATCAGACTGGTGTTCTCCTTGGGCAGGAATGGGGGTTCTGACGGCGGGACCGCACTGTGGCACACGGCTACGACAATCCGGCGCGCACTGCGAAGCTGCGGTGGAGTGTTACTCTGCCCAACCTCGAAAGGGTTCGCAACCGAATGAAAACGACACCATCGGGCCCTAAAAGCGCAGGTCATCAAGG # Right flank : CCCCGAGGATCCAGCCGATCGGCCCGGCGCCGAGCTCGTGTCAACGACGTTCGAAAAGTGACCCCCTCACGACGCCTGAAGGTTGACCCCTCCTTTCGCGTGTGAACTGCTAACGAGTGGTCCCGGCCGATGGCGGAACCCGACCCAGATCCCGGTCCTTCAACCGATAGCTGTCACCCTTGAGCGGAACCACCTCCGCGTGGTGCACCAGGCGGTCGATCATCGCCGCTGCCACCGTGTCGTCCCCGAACACCTCGCCCCACCGACCGAACGCCTTGTTCGACGTCACGATCAACGACGCCCGCTCATAGCGGTTCGAGACCAGCTGGAAGAACAGGTTGGCCGCCTCCGGCTCGAACGGGATGTAGCCGACCTCGTCCACCACCAGCAGCGGATACCGACCCAACCGGACCAGCTCCGCCTCCAACCTCCCGGCCGCATGAGCATCAGCCAACCGGTTCACCCACTGCGCCGCGGTCGCGAACGCGACCCGGTGCCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACCCGCGGGGGTAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1834381-1837385 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBKY01000001.1 Nocardiopsis sp. Huas11 Ga0236289_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1834381 29 72.4 31 .C..........GGCC.A.......C..C TCATGAGGCCTGACGGCCGCCGGTCCGGAAG G [1834390] 1834442 29 89.7 32 ...........A.............C..T GCATTCAAATGGTCCAGGAGCCTGACCAGCGA 1834503 29 86.2 32 ...........A..C..A.......C... GAGCGCTGGAAGGCCAACGTCGGCGGACTGGG 1834564 29 82.8 32 .........A.A..C..........C..A GAGAGCGACCCCATCCAAGCTTCGTGTATCTG 1834625 29 89.7 32 ........T..A..C.............. GCCAAGGGCACCGCGTGGGAGTCCGCCGTCCG 1834686 29 93.1 32 ..................A.........C AGGAACCGGCGGTTGATGACCTTAGGGACCGC 1834747 29 82.8 32 T..........A..C.......C.....T AGGTCCCCGGGCAGACCAGCCTCCTGGAGTAG 1834808 29 93.1 32 ..........T...C.............. ATCTGGGACCCGCCCACCGACCCTGCCGAGGC 1834869 29 79.3 32 ..........T.T.C..A.....G....C AGCTGGGCCCACAGAAGGTTGACCGCGTCCTG 1834930 29 89.7 32 ...........A..C...A.......... TCGGTTTCGATCGTCTGGACGTTCACCCCACC 1834991 29 86.2 31 ...T..........C..A.........G. AGAGGTCGTCGCAGTGCCCGGGGAGACCAAG G [1835015] 1835052 29 89.7 72 ...........A..C..........C... CACCGCACGGCCCTGTGGGCGGACGGCGAGGCCTCGTCCCAGGGCCACGTCCACGTCCCGCCGGGTGTTTTC 1835153 28 82.8 33 ........T.TA..C..........-... GCAGGCCCAGATGTCGGAGAGCGAATGCGAGAT 1835214 29 89.7 32 ....................AA......C GGGTTCGTGGTGCCGTAGTCGACGCCCACGGA 1835275 29 96.6 32 ............................C CACGCGATGGCTTGGACTGCAGATCAGGTCAT 1835336 29 86.2 27 ...........A..C..A......A.... CCGATCCCTCCGCACATCCTGGGTCGG 1835392 29 79.3 32 .CT........A..C..A..........C CCGTTGGTGGCGTCCTCGGCCTGCACAAACAG AC [1835396] 1835455 29 96.6 32 .........................C... CGGTGGGACGCCTACCGCGCCGAGCGCGCCTG 1835516 29 69.0 30 T.T.C......A..C..C.....GA...C GGGCGCGCGGATCCTGGAGATCGGCACCGC 1835575 29 89.7 32 ...........T........A.......C CGGCCGCCGCCCCACCCAGAGAAGGGCACTAC 1835636 28 75.9 32 ..T..A.....A..-A........A...C GCCGACGGCATGTCCACGCCGATGGACCGGCT 1835696 29 96.6 32 ............................C CGCCCCGACACCTGACCTCCGTGCCCACCCGG 1835757 29 100.0 32 ............................. GTGACACACTGTGACGATTTTGGCGGAGTACA 1835818 29 96.6 32 ...C......................... CATCGCGCTCGGCCGCGGGTCCCGCTCCGGCG 1835879 29 100.0 32 ............................. TCGCGGGTGTGCTTGGAGAAGCTCAACCTGAT 1835940 29 93.1 34 .........................C..A CGGCGCGCTCACCCATCGTGAGGGCATCCAGCAC 1836003 29 100.0 32 ............................. CATCGCGCTCGGCCGCGGGTCCCGCTCCGGCG 1836064 29 100.0 32 ............................. TCGCGGGTGTGCTTGGAGAAGCTCAACCTGAT 1836125 29 100.0 32 ............................. ATGGCCGACGCGGTGGCGTCCAGGATCTTCCG 1836186 29 96.6 32 ............................T GGGCTGCTCTGGACGGTTTGCGTAGATTACGA 1836247 29 100.0 32 ............................. TCGTCCACGTCGGTGTCCTCCTGGTGGTCGAC 1836308 29 89.7 32 ...........A..C.............C CTGTGGCAGCGCAACATGTTCGCCGTCCGAGC 1836369 29 89.7 32 ...........A..C.............A CCGTGACTGAGGTGGGTGAGGGCGCCGTCCCC G [1836386] 1836431 29 89.7 32 ...........A..C..........C... TGAGCGGCGATGCGATCGAGGTCGTCCACGGT 1836492 29 89.7 32 ...........A..C..........C... CTGCTGGACGGCAAGGATGCCGCGGTTCGCGC 1836553 29 82.8 32 ...........C..C......A.....GC CACCTCGGCGTGATCATGACGCACGTGCGCCC CA [1836563] 1836616 29 86.2 32 ...........A.GC....A......... GCACTTGCGCTGTGCACCATCGTCTGGGCGGC 1836677 29 82.8 32 .........C.A..C......T.....T. CTCGCGTCCTACGCCCCCGGGGACACCCTCGC 1836738 29 100.0 32 ............................. GTGATGGCGCCCCGGTTGCGTACGCCGGACTT 1836799 29 82.8 32 ......G....A..C.......C..C... CAGGCCCAGATATCGGAGAGCGAATGCGAGAT CA [1836815] 1836862 29 93.1 32 ..T..................A....... TTGCCGGAGTACCTGTGGGAGGGCGAGACCGT 1836923 29 93.1 23 ..................A......A... GCGGTTGATGACCTTAGGACCGC A [1836948] Deletion [1836975] 1836976 29 89.7 32 ...........A.AC.............. AGCAGCTACTCGACGCCGCAGTCTCAGAACTG 1837037 29 86.2 32 ...........A..C..A.......C... AGGTCAGGAAGGGTGTGGAGAGGAGAAGCAAA 1837098 29 93.1 32 .....T...........A........... CCGCCATACGTGCAGATCGCGGACCACTACTG 1837159 29 89.7 32 .......T...A...........G..... CTCGCCGTGTACTCCGTCCTTGCACTGGCGCG 1837220 29 89.7 32 ................T.A.........C GGTAAGGGTTCGTGCATCGATGCCCGCGAGTT 1837281 29 75.9 47 .......G...A..C.T........A.GT TGAATCCGAGGCTGGTCTCGCCCGCGCACTCGCGGGGGGGCATCACC 1837357 29 82.8 0 .........A.A..C....A.....A... | ========== ====== ====== ====== ============================= ======================================================================== ================== 49 29 89.2 33 CTCGTCCCCGCGCCTGCGGGGGTAGTCCG # Left flank : GACGTTCGAAAAGTGACCCCCTCACGACGCCTGAAGGTTGACCCCTCCTTTCGCGTGTGAACTGCTAACGAGTGGTCCCGGCCGATGGCGGAACCCGACCCAGATCCCGGTCCTTCAACCGATAGCTGTCACCCTTGAGCGGAACCACCTCCGCGTGGTGCACCAGGCGGTCGATCATCGCCGCTGCCACCGTGTCGTCCCCGAACACCTCGCCCCACCGACCGAACGCCTTGTTCGACGTCACGATCAACGACGCCCGCTCATAGCGGTTCGAGACCAGCTGGAAGAACAGGTTGGCCGCCTCCGGCTCGAACGGGATGTAGCCGACCTCGTCCACCACCAGCAGCGGATACCGACCCAACCGGACCAGCTCCGCCTCCAACCTCCCGGCCGCATGAGCATCAGCCAACCGGTTCACCCACTGCGCCGCGGTCGCGAACGCGACCCGGTGCCCGGCCTGGCAGGCCCGGATCCCCAACCCGATCGCCAGGTGCGTCTTG # Right flank : GTACCTCAGCATGATGGCCGACAGATGAACCGTTCTCTGCCAGGGACAATGACCGCGAAGCAGCAGCGATAAGCACCAGCACGGCCGCCAAAGCCGAAAAGGGCGAGCAGGGACCGAGTGAGGGTTATCCCGGGCGGGTGGCGGACATGAAGCGGGCGGAGTAGTAGGGGCCGTTGACCGGCTCGACGCGGATGTTCTTGCCGGTGCTCGGGGCGTTGACCATCTTGCCGTCGCCGACGTACATGGTGACGTGGGCAGGCGGGGCACCGGGACCGCCGGTGTCGTAGAAAAGCAGGTCTCCGGGGGCCAGCGCGTCCAAGGTGACGGAGGTTCCGAAGTTGACCTGGTCGGTGGTTACGCGCGGGATGGAGACTCCGGCGGCTTCCCAGGCCTTCATGGTCAGGCCGGAGCAGTCGAAGCCGTGCGGGCCGGTGCCGCCCCAGACGTAGGGCTTGCCGACCTGGGCCAGGCCCCACTCAGCGGCGGTTCTCCCCCGCTCG # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCGCCTGCGGGGGTAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [55-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 2927657-2927101 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBKY01000001.1 Nocardiopsis sp. Huas11 Ga0236289_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 2927656 37 100.0 36 ..................................... AAGCCGGTGACGATGCCGACGAACGGGAGAACGTAC 2927583 37 100.0 51 ..................................... CAGGCTTGGAGCCGTGCTCCGGACATTCCGGGTCTACCCGGAGCGTGTAGG 2927495 37 97.3 33 ...................................G. AGGAACGCTTCTTTCGTGACGATTCCATCGTAT 2927425 37 100.0 34 ..................................... CACTTGGGCCCTTCTTTGGCTTCGTTCTCCTTTT 2927354 37 97.3 33 ......G.............................. TTCCGCCACAGCTGTTGCCGTGGCGAGTCACGA 2927284 37 94.6 34 ..................T...C.............. GCTGACGGGTGTCACGGCACCAGCAAGGAGGAGG 2927213 37 100.0 38 ..................................... ACAAGCGTGGGGGTTGCTCTGATTAGTAAAATACCCTG T [2927195] 2927137 37 73.0 0 .....A.T.C.GC..........C....T.A.A...A | ========== ====== ====== ====== ===================================== =================================================== ================== 8 37 95.3 37 GTTCCGCAGGACGACAAAGCCCGTAGGGCATGGAAAC # Left flank : GCTCGCCGGGTCCTCCAGTAGGAGGCAGGCCAGAGCGTGCACGTGCGAGGGGGAGACGCCAGGGGGTGGCGGGGGCGTGGGGGTGAGTGACCACTGGGTGGGCACATGACCTCCTTGGGGCACCTGCGCGAGGCCGTAGAGGTTCGATGGTGTGGGGGCGCGGGAGGCTCCACATCTGGGCGCTCACGTTAGCAACGCGAAGGGCGCCGTGTCAGGGGAAACGGGGATGTATGGCCGTTTGCGGCACAGGGGTGGCGGTCGCAGCTCTGAGCGGGTAAGGATGAGGGACTGCGGCCTTGCGGAAAGGTACGGCGCTGGACGTGTACACCGAATCCCGTTCTGGTGTGGAAACCCCGGTTTGCGTGCAGCGTGTTTGTGCTGGTCAGGGGCTGCCAACCGTGATTTGTCGCCTGGGTCACATGCCCTCGGATGGCTGGGAGGTCGATCGCGTGCAACAGGGGTGTATCGCCGCAGCTCACGAGCCATGAAAATCGGGAAGG # Right flank : TAGCGCCGAGTGAACTGCTCACATTTCAGTTGGAGCTTGACACCTTGGAGATTTGGCGGTCCATTAGGCCATAGATACCCCAAACACATAATCACCCAAAAACAGTCGATTTTGAATTCACTCGATGACTTTGGATTCCACTCGTGGTGCACCCGCGAGGGTGCACCAGACAGGGAAAGGTCGTGCACCCGGAGGGTGCACGACTCGTGGTGGAACTCAAGACAACCGAGCACAACGCGGGAACGCCTACCCCACTGAACTGGCACTTCTCGTGTTTGTGCAGGTCAGGCATCTGGGGCTGGGCGGTTCGATTCCCGTCATCCGCTCCACGCATGAATAAGGCCAGGTAGATCGGTGAAAACCGAACACCTGGCCGAACTGCTTTCCAGGGGTCTGTGGTGACGGATCGTCGCCGTCGTCGGAATCGGTCCGCTTCGACTTGAGTTCCTCGGCGACCCGCTCCCCCAGCCGGTCAGTGATCTCCCGTTCCCGTTCCTCCC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCAGGACGACAAAGCCCGTAGGGCATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 2938338-2938814 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBKY01000001.1 Nocardiopsis sp. Huas11 Ga0236289_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2938338 37 100.0 34 ..................................... CCCCCCTTGAAGGGGATTCGCACAGAGTGCTGCC 2938409 37 100.0 38 ..................................... GGGACTCCGGTTGAAGTCCGCTTCGGCCGCCCTGATCT 2938484 37 100.0 34 ..................................... TCAAGGGCGTTCGTGAACATCGGGCTGATCATCC 2938555 37 100.0 39 ..................................... CTCCTCAGACGAGAGCTTTTGGCTCGGGTCGAGGTGCAA 2938631 37 97.3 36 A.................................... GACTTGGCCAAGAATTTATCGTTCAAGGTTGCTCAA 2938704 37 94.6 37 ..........G..C....................... ACACGAGTCCTCCTCCGTAGAGGATGGACAGCATCGT 2938778 37 83.8 0 .......G...............A....T...C.GG. | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 96.5 36 GTTCCGCAGGACGTCAAAGCCCGTAGGGCATGGAAAC # Left flank : TTCGCGTTCCATAACAAGTTTCTCCCCACGGACAGAAACCATCGGGTATGGCTGCGAAACGCCGCGGATCGAAACCGCCAACTGGACGTGACCGACACCCATGTGCGTGAGCGAACCGGGAGGTGGATCAACTCGAGTCTCAAGTCCCTGTGAGGTGCACGAGAGATGCCCCTCGTTGCGCAGGTTCCGGTCTCAACGCTCGCGACACCGGTGGAGGTGTGTCGGGGGAGGAGGATGTGTGGCCACTTGCGGCAGGGAGGTGGTGGTTGTGGACGTTGGTGGGTAAGAATGAGGGCACGGCTCCTGACTGAATCGGTGGCCGTGTACACCGAACCTCGTTCGGGTTTGAGAGTGCGGGGCGCGTGCAAGGCATTTGCGCTGGTCATAGCGTTGGATCTGCGTTTTGTTGTCTGGGTCACATGGGTTGAGGTGGGTTGGAGGGCCGTCGCGTGCAGAAGGGGTGTGTCTCCGCAGTTCAGAGGCCCTGAAAAATGGGAAGG # Right flank : CCTTCTGTAAGCCTGCCGGGAAGTGGGCATAATGGGAGATCTTCTTCGCCAGGTCGCGGACAGCGAACGGCTCTTCTCGGCGTGGAATGAGGTTCGCGACAACGATTTGGAGGACGGTGTCAAATCAGACCAGGTCCAAGACTTCGAGCGGGGCGCTCTGCGTAACCTGGTGGAGCTGAGCGAACAGCTCTCGGCCGGTGAGTACGAACCCGGGCCGGTGGTGGCCATCGAGGTACCCAAGTCCTCGGGCGGGACACGGCTCCTCGCGATCCCCACGGTGCGGGACCGCATCGTCGAACGCGCCGTGCTGGAGGTCATGGACCCCTATCTGGACCCGGTCCTGTCCCCGTGGAGCTTCGCCTACCGGTCCGGGCTGGGCGTGGCCGACGCGATACGCGCCCTGGCCCAAGCCCGTGACGCGGGAGCCCGGTGGGTGGTGCGCTCCGACATCTCCGACTGCTTCGAGCGCATCCCCCGCTGGCCGGTCATGACCCGGGTCA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCAGGACGTCAAAGCCCGTAGGGCATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //