Array 1 7429-438 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNQA01000535.1 Xanthomonas oryzae pv. oryzae strain YN44 scaffold534, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 7428 31 100.0 35 ............................... GTGAGATCGGCCGCGTGCTCGCCCAAGGTGAGCCG 7362 31 100.0 37 ............................... ACATTAGCATTTGACGATTCTACTGGCGATCTGGTCC 7294 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 7228 31 100.0 37 ............................... CGCCTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 7160 31 100.0 33 ............................... TCGCCAGATTCCCGACGAACACATTGCTTTGCA 7096 31 100.0 35 ............................... TCCTGGTTGGTGTGGTATAGAATAACAGGGCTGAC 7030 31 100.0 34 ............................... CTCTAGTGTTGTGCTGGGGTCAATTTTCGATGAG 6965 31 100.0 34 ............................... TCACGTTTTGGCATCCTTGTCAATAGACAACTCC 6900 31 100.0 33 ............................... TAAGGAGGCTTTTATGCCAGAAACAAAACGGCT 6836 31 100.0 35 ............................... GACACTTAACCGGGTGAGAGATCTCCCAGACACTA 6770 31 100.0 35 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGTC 6704 31 100.0 35 ............................... CGCCTTTGCCATCTAATGCACATGATGGCCTAGCT 6638 31 100.0 34 ............................... CAGCGCAACATGGTCACGGTCTTGGCCGAAGAGC 6573 31 100.0 34 ............................... TCATGGCCTGACGTCCTTGTCAAGCAATTTTGAA 6508 31 100.0 35 ............................... CCAAGCTATTGCCAGCTTATTGTTGATGGGTACAG 6442 31 100.0 35 ............................... ATTGTTCCGGCAACGCACCTCAACGCCATAGCGAT 6376 31 100.0 35 ............................... TTCGTGTGAGTGTGAAAAATGAAGCCCGTGAACTT 6310 31 100.0 36 ............................... TTGAGACCTGGCTATGACTCAGTTGCAATGCAGATC 6243 31 100.0 35 ............................... TCGGCATCCCGAAAAACAAGCTGCGACTTGAAGGG 6177 31 100.0 34 ............................... AGCACTTTTCCGCCATGCTTCGCGATGAGGTGGG 6112 31 100.0 35 ............................... AGCCGTGCTGGGATGTTCTTCCGGCGCCACGTGCT 6046 31 100.0 36 ............................... ATCGGCATGTCCACCAAACTGCAGGAGTGGTTGGAT 5979 31 100.0 34 ............................... TGAGAAAGCAGCTGCCAAGGACAGCGAGGCGATT 5914 31 100.0 35 ............................... TCCTGAACCTGATCCGGCCGTTGCCGACGAAGCGC 5848 31 100.0 36 ............................... CTGAAGATTGCAGATTATCCAGCAGAGGTGCACGAG 5781 31 100.0 34 ............................... CACGGTCCCCTTGCTCGCGCCGACGCCGCAGCGC 5716 31 100.0 35 ............................... TGTTTTGCTGCTGCACGTGCATCTAAGGCTTCTTC 5650 31 100.0 35 ............................... CTCTGGCTCAACAACGAAGGCGACACCAAGAACAT 5584 31 100.0 34 ............................... TCCCCCTATGCATCTCAATTATCCTCAGCAGGAT 5519 31 100.0 35 ............................... TGGTGCAGGTACAAGGAGGGCAGAACCCACTGACT 5453 31 100.0 35 ............................... CGCCGTCAATGATTGGTCACAGCAGTGCTGGTACA 5387 31 100.0 34 ............................... CAGCGAGATGAGGCTGAGGCACGGGCACGTGTGG 5322 31 100.0 33 ............................... AGTACCAGAGTACCGCAAACAGATTAACAAGAC 5258 31 100.0 33 ............................... ACTGTAAAGGCCCTAATCCAGGGGCAGGCCAAT 5194 31 100.0 33 ............................... CAGAGGGTAGGTGGTGTGCCTATTTATTGGCAG 5130 31 100.0 35 ............................... TCGAGCTGTGGATATGCAAACTCAATTTGACCAGT 5064 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4999 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4934 31 100.0 35 ............................... AGCGCAACATGGTTACGGTGCTGGCTGAAGAGCGG 4868 31 100.0 33 ............................... ATTGATGCTTGCATTTACAACATAGGTTTCGCT 4804 31 100.0 33 ............................... ACAATCAATGACTGCCCACCAAAGTTGCCCCTG 4740 31 100.0 35 ............................... CATACTGCACCATTTGAGTCGCCCACGCCTGTATC 4674 31 100.0 34 ............................... TAAAGTAGGACTTCCCAAGGTTAAGAGACACACC 4609 31 100.0 35 ............................... ATGTTAAATCCAACCAGTACCCGGCAGTTATTGAG 4543 31 100.0 35 ............................... TTTTGTTCTGTGGATTTATGGGCGCGCTGTGTGGT 4477 31 100.0 34 ............................... TGGCCCTTGTGTTGCGGAGGATACGTTTTTCCTC 4412 31 100.0 35 ............................... TTCTTTGGGATTCCAAGGAATCTTGAGTTAGGCTT 4346 31 100.0 34 ............................... ATGTTCAGCCGGATCGAGTTCACGAAGATCAACT 4281 31 100.0 34 ............................... ACGACCACCTGGGCGGCCAGCTTGAGCGACCGCA 4216 31 100.0 37 ............................... CTCGCGGTACCACCCGCGCCAGTAAGGGTACTGATCC 4148 31 100.0 34 ............................... ATACGCCACTGAATTAGGCATCAGGTCTAACCGG 4083 31 100.0 34 ............................... ACGTTAACTACCGCACGCAGGTAGCCGACACCCC 4018 31 100.0 35 ............................... AAGTCCTTGGCCGAGCGTATCGCAAGGCACTGCAT 3952 31 100.0 35 ............................... ATAGCCGTAGTATGGGTTCACTTCGGCCACGGATA 3886 31 100.0 34 ............................... TGGCGAGACTGCCACCAACTCGCGACGGTATTGT 3821 31 100.0 34 ............................... ATGATCGTAGGTCCTATGTGGGTAGGTCGTGTAG 3756 31 100.0 36 ............................... CTCTAGCGTCTGTGAAGGATCGGGAACGCAAGGCCA 3689 31 100.0 35 ............................... CCGATCTGCGCGGTAGGAGCGCGCCGGTCTGGACC 3623 31 100.0 36 ............................... TTTAGCTTTCAAACCGCTCTGCGCCAGCAAGCGATT 3556 31 100.0 35 ............................... TCGTGCTCCGTCTCAACCAGATAAACCGCATAGTC 3490 31 100.0 33 ............................... ACTGCGCGAGTAAAGCGTTATCCGTAGGGGCGC 3426 31 100.0 35 ............................... AGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTG 3360 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCGCGCGGTGTCG 3294 31 100.0 34 ............................... CCGCAAGCGCTCACCGCTGCGCTACACGCGACAC 3229 31 100.0 35 ............................... TGGGTGATGCGCGTGACCTTGTCGGCCGCGAGATC 3163 31 100.0 34 ............................... GATGTAGATGCGCGTGCACTGCGGGTAAGCGGCC 3098 31 100.0 34 ............................... CAGGTCAAAGCATCAAAGGCGGCGTTGTGCGCGA 3033 31 100.0 35 ............................... TTCTTCCTTGCGCGAGTACGGCTTACGAAATACGT 2967 31 100.0 34 ............................... TCGAATACCGAGCCCGAACTGGTGCGTGACGTGC 2902 31 100.0 35 ............................... AAACCAGACGCCCAGAAACGCAAGCGTGCGATTGT 2836 31 100.0 36 ............................... ATGACCTTAAGCTCCGTACTCGCGGTCCGCAGGATT 2769 31 100.0 34 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTA 2704 31 100.0 36 ............................... GCAGCTAGCCGCTTGGCGTTTTTTTCGTCCCGAATC 2637 31 100.0 35 ............................... CTGGGTCTGATGCTTACGATGCACGCGCGCCAGGA 2571 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 2505 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 2439 31 100.0 35 ............................... GCGCACTTGTTCGATGTACTGCGCGCGGGATTCTT 2373 31 100.0 35 ............................... TTTGCCGGAGTACGGGCGAAACCCACGCCCGACGA 2307 31 100.0 34 ............................... GGCCGCCGAGATATCAACCCCGATGCCGCGCATG 2242 31 100.0 35 ............................... GCCGACACGAAAGCTCTGAAACGTTGCATTGCTAA 2176 31 100.0 35 ............................... ACCTACGACGGCTCGTCGACCTACGACGGCTTGCA 2110 31 100.0 35 ............................... ACATCGCATCGACACACGGGCGTCTCAACCGGCAG 2044 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 1978 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 1912 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 1847 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 1782 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1715 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1649 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1584 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1517 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1451 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 1387 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1322 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1256 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1190 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1125 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 1059 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 993 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 927 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 863 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 796 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 731 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 665 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 600 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 533 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 468 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 107 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //