Array 1 8839-9050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000027.1 Streptomyces buecherae strain AC628_RSS909 NODE_29_length_37048_cov_51.587536, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8839 29 100.0 32 ............................. TGCTCGACCTTCTTGAGCAACGACTCCAGGAA 8900 29 100.0 32 ............................. GAGACCGACCTGGAAGCCGCCACCTTCGCGTG 8961 29 100.0 32 ............................. TTCCTGCTGCCGTGGGTGACCAACGGGCTGCT 9022 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CCGCCGCGTGTACGCGCGGCTCCGTACGCTGAGCTCATGGTTGAGAACACCGTGCCCGTACGGGAAGCCCGCGCGCGTCCGGCGGACTACATCAACCGGGCCGAGGAGGGCGTTCCGACCGTCATCACGCGCGACGGCGTATCGGTGGCGGCCCCAGTCCCGATCTCGGACCTCGAAGCGCTGGAGGAACTGGAGGAAGCGGCCGACGTGTTGTTGGTGCATGAGGCGGAGGCGGTCCTGGCCGAGGGCGGGCCGACGGCGACGATGGCCGAACTGCTGGCGGACCTGTTCAGCGAGCGCGGTGCGGGTGCGGCGTGAGGTACGCGTTCCGGTTCACTGCGGCAGCGCAGTGGGGGCCTCGGGCGGCACCGTGGGCTGAAGGGCCTATTCGCTCGTATAAACCCTGCGTGAGCGCTTTGGCGAGATGGGGCGATAGGTCGCGATCAGTGGAAGTTGCAGAAAACTCGGGTTCCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : CGGCAAGAAGCCCAAGCCCGATCCGGCGGCCCCGCTGATCCCCTCACGCGGGGATGGCCCCCGAGCGCCACCAGCCCCCAGACACCACCCCCGCCCCGCCGTCACCCCCCGGCGCGCTCCGCCACCCCGAACGCGATCCCGTCCAGAATGTCGTGTTCGCTCACGACCACCTCGCGCGCGCCCGCGCGTTCCATCAGAGCCAGCAGGACGAGCGCGCCCGCGCCGATGACGTCCACGCGGCCCGGGTGCATGACCGGGATGGCGGCGCGTTCGGCGTGAGTGGAGTGGAGGAGGCGGTCGGTGATCTCGCGGACGCGGTCGAGTGGGATGACCGCGTGGTGGATGGCGGCCGAGTCGTACGCGGGCAGGTCGAGTGCGATGGCGGCGATCGTGGTGACCGAGCCGGCCAGGCCGACCAGGGTGTAGCCGCCGGCGGCGGGGCGGAGCGGGACCGTCTGCTCGACCGTGTCGAGGGCGGCCTCCACGTCGGCCCGTATCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154833-154254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000041.1 Streptomyces buecherae strain AC628_RSS909 NODE_44_length_191125_cov_54.678776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 154832 30 96.7 31 .............................A GGGCGTGCCGGGCGTCCGCGTCGAGCGCCTC 154771 30 100.0 31 .............................. TGCCCGGTCTTGCCATTCGCGTGCACGGGAA 154710 30 96.7 31 .............................G TCGACGTTGGGCTGACCCGAATCATTCTCCC 154649 30 100.0 31 .............................. ACCTGGCGGAGAAGGGTTACGTGTGGGGCGC 154588 30 100.0 31 .............................. GACCTGCACAAGCAGGCCGCGCGCGCCGCGG 154527 30 96.7 31 .............................G CCACCTCCGTGATCCTTCTGGGCGAGGGCGC 154466 30 93.3 31 .......................A.....G CCGAGGCGGCGAACTACCGCACCAAGCTCCG 154405 30 90.0 32 ................T..........T.G GCTCGCTAGGTTTGCTGTTACCAAGAATGTGA 154343 30 90.0 31 .A...........G...............G AAGGAAATTCGACATGCGTCACTCCATAGGA 154282 29 93.3 0 ........................-....G | ========== ====== ====== ====== ============================== ================================ ================== 10 30 95.7 31 CTGGTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CTGACTCCCGCTCTCTCGTGCCGGCATTCGCCCTGGTCAACGCTGTGTTTGCGCTGGTGACCAGGCGAGTGCCCCCGGCAGGATTCGAACCTGCGCACACGGCTCCGGAGGCCGTTTACATGAGACGCCTCAAAGTGGCTCTGACCTGCTAAGTAGTCGACTTGTTGGCGAGCGGTTCGGCGTTTCACGCACTGCTCACGCGTTGGGGGCTGGATTCGCGGGCGGCCGGGGGCGTGGCCGCTGGGGGTGCGACGGTCCCGTTTCTCCTCCCGGGGCGATGACTTGGGGAGGCGACGATTGCGGTGTGGGGTCCGCGTATGGCTCAGCAGGGCAGCCGATGAACCCCGGGGTTGGTCTCTGGTAATGAGCGATAGCCTCGTACAGGCCGGGTCGGAGATTGGAGTGCTATGGCTGCTTTGTCGAGATTGGGCGATAGGTCGCGATCGGTGGAAGTTGCAAAAAAGCGGGCTCTCGCCGGATAAACCCGCAGGTCAATTGCT # Right flank : GCCTACCCGCGTATGAGGAACCGGCCGCAACGGCTGTTCTCACATGTGCGGGAACAGCTCGCGCACGAACGACCCGCGACGAGCGAAGGACGGAACACCACCCATGGGCCCGAAGTCCGCGAAGGTCTACGAGACGATTCTGGAGTGGATCACCTCCGGCAAGCTGTCGCCCGGTGACAAGCTGCCGTCCGAGCGGTCCCTTGTGGAGGAGCTTGGGATTGGGCGTACCGCCCTTCGCCAGGTGCTCGCCAAGCTCGTGGCCGAGCGTGTGTTGGAGGTTCGCGGGCGGAGTTCGTACCGGGTGCCTGGTGGGGTCAGCGTCGCGACGCCGGAGGGGCTGGAGCCCTGGCAGGTTCACGGGAAGCGGACAATTTACGACAACCGGTGGGCCAAGCTGAGCCTGTGGGATGTCGAGCCGCCCGGCGTGAAGCGGTTCGAGCATCACGTTGTCGAGCTGCACCACGTGGCCGTGGCCGCTGTTCTGGACGATCAGGACCGGG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27135-26862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000042.1 Streptomyces buecherae strain AC628_RSS909 NODE_45_length_29046_cov_52.422813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27134 29 96.6 32 .........................C... TGCCCTCGGCGAGGAGACCGGCGCGCTCATCC 27073 29 100.0 32 ............................. AGCAAGCTGTACGACGGGATGAGGCCGACACG 27012 29 100.0 32 ............................. GATGCCACCGAGCTGGCCGGGCTGCTCGACGC 26951 29 89.7 31 ...........AT........G....... AGGTCCGCGCCGTCCGCTGATGCGGCCAACG T [26924] 26890 29 75.9 0 .....T...CAA...AT........C... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTCACCCGGAGGGCGGCGGCGAGAAACGGAAGCCAGTCACGCGGCGTGCGCTTTCCCGTCTCCCAGCGACTGATCTCCTGACGGCCTACCGGCTCGCCCCGAACACCAGCGACCCGACAGACCTCCCGCGCCAACCGCGCCTGACTCCACCCGAGCCGCTCCCGCTCCCGCCTGACGTTCACCCCAACTCCGCTCCTCATGAGCCCAGTTTGGCCGACAGTTGGCCTACATGTGGGCGCTGGCGTGGGGACGTGGGATGGGTGGCGGTCGTTCCAACCACGGGGAGGGGGTGGGGGCGAAGGGTGGGTGGCTCAGAGGAGTTGGCGGACTCACGTACTTGTTCGTCGGCGTCGTGCGTGGGGGCCGAAAGATAGCCTGGGTGGCCTGGAGGGCGGCAAGGGGGAGCTTTGGGTGACCTGGCGGGCTTAGGCGGTAGGTCGGAGTTCGCGGAAGTCGCAAAAAACCGGGGTGCGGCGAGATAAAGCCGCAGGTCGATTGCT # Right flank : GCCCACCGAACCGCGTCGGTGTCGCCGCGACCGTCCGGTCAACGGTCCCCCGATGCAGCCGCGTTGACAGAGACTGTCGTGGCCCGGCGTGGCGCCGCAGGAGTACCGTGCGGGGAGGGGTGGATGCCGAGGAGGGCCCGCATGCCTTACTCCAATGTTCCGACGAGCTTGCTAACAAATGGCCAGCGCCTTGCCCGTATAAGGGATCGCCGCCGGTGGACGCAGACTCGCCTCTCAACGGAGAGTGGCTATTCGCTATCCGCCGTGAAGAAGTTCGAGCAAGGGCGTCGTTCGCTGGATCGCGCGGACGTCATTCTGCGGTTCGCGCGGGCTCTCGACTGTCACCCCACCGAGATCACCGGACAGCCGTATTCTCCGCCCGACGGTGATCTCGACGGACATTCGGCCGTGTTGTCGATCGCCGCCATCCGTCGTGCTCTCCTGCGGCACGGTCGCCCCTCGCGGCCGTCGGAGCAGGAGGTCGTGGGCGTCGATATGGA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14648-14915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000214.1 Streptomyces buecherae strain AC628_RSS909 NODE_319_length_62369_cov_56.681252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 14648 30 93.3 31 ...............T.............G ATGACGCGGTGACGCTGGGCTCGGTGGCCGC 14709 28 93.3 31 ................--............ GGATAATGCTCTTGCCGATCTCAAGCCCGAA 14768 30 100.0 33 .............................. GCCGAACCCGCTCCCCCCCCCGCTCACGTATGC 14831 30 90.0 28 ..................A......C...G AGGACAGCCCGGCGCGCATCTGAACCGC 14889 27 83.3 0 ......T.........--........G..- | Deletion [14916] ========== ====== ====== ====== ============================== ================================= ================== 5 30 92.0 31 CTGCTCCCCGCGCGCGCGGGGATGGACCCT # Left flank : TCGTGGCCGACGGGCTCGTGCGGCAATGCGATGTGCGCCGGCCCGACCCGAGCGCGGAACAGCACGACTGGCCGAAGGGGCCGGTCGCGCTGAGACAGCCGGCGCCGCGCCTGGTGCACCGAGGTGGCCGTGCACGAGGTCTACTCCCCGCGCGCGCGGGAGTGCCCCCGGACTCCGACTCGGGAGTGGAGGCGAGGATGTCGACCCGGTGGGAGCCGTTGGTGGGGCCGGGATGCCGTGGGCCGGCCTTGGCGGCGGTCTGCCAGGCACGAACTGCTCTCGGCTCGGCCACGTGGCCCGAGCCCTCTCTGTTTTCCGTCGCAGGGATCAGATCAGCTTGAGCGGTTGGGGGTTTGATGGCGGACTCGTCGCTAGGCTGTGAGGTCTGGCTCACAGGGAGGGATGTCGTGGTTGGTATGTGAGATTTGGGCGATAGGTCGCGTTCTGGGGAAGTTGCAAAAAATCGAGGTTCCACCCGATAAACCCGCAGGTCAATCGCT # Right flank : CGGGTCTACAGTGAGGTGCGGCGGGCGGCACAGTCCAGGGCTCGCAGCAGTTCGGGCTCCCGTCCGGTACGGGGGCGTAGGCGAGCAAGCCGGCGGTGGACAGCACGTCGAGCTGCTCCTGGTGCTCGACGTCGAGCCGCCACGCCTCACGCAAGACGTGCCTGGCCTCATTGCGGATTGTGCCGTCGGTGGTCGCGGCGGTCCGGGCGTCGGGCAGTGCGGCGAGCTGGCGGCCGGCCTGCTCCAGGCGGCCCATGAGGGCGGCGGCCCGCTCAGCGTCCGGACGGGGCGGCACGAGGTGGAGCTCGGCCGCCGCGGTGTAGGCGCGCTGGGCACCACGCGGCTGCAGGGTGGCCCAACGCGAACGCGGCCGACTCCGGTCAGACCCCTCGCGATCGCGCACGCGTGAGTCTGTCGCACAACGTGAGACTCTCGCCGAGTCCACCGCCCTTGCCGGCGCCCGTCCCGGCCTGTCGGGCGGCGCCTTCAGCGAGCCTGAG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGCGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16854-17392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000214.1 Streptomyces buecherae strain AC628_RSS909 NODE_319_length_62369_cov_56.681252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================================================= ================== 16854 27 85.2 33 ...................GCT.G... CTCCCTGGCAGTGACCATGACCGTACGGAGTTG C [16870] 16915 27 96.3 31 ...................C....... GGAGGATCTGGGCGCCCTCGTCTACCTCCCG G [16941] 16974 27 92.6 30 ..............A........T... TCGTCACCGAGGACTTCCCCGGCACCGTGG 17033 27 100.0 32 ........................... TCAGGCGTCACGTGACGAACCCGCCGCGCCGC GC [17048] 17094 27 92.6 32 ..................T..A..... CGACCCCCCACGCCCGCGCTACCTGCCCGTGC GC [17109] 17155 27 100.0 77 ........................... GCCAGGTCCACCACCAGCGGGAGGATGAACGCCGGGGATGGCCCCGGCCGGGGCCTGTTGTGCGTGAACAACGGGCC 17259 27 92.6 20 .......T....T.............. CGGCCCGGCACCTGCCAGGC Deletion [17306] 17306 27 92.6 32 ..............G...C........ AGCCGTAGTCGAGTCGGCGGCGGCGCTCCAGT 17365 27 88.9 0 ..............G..C..C...... | A [17390] ========== ====== ====== ====== =========================== ============================================================================= ================== 9 27 93.4 36 CTGGTCCCCGCGCGCGGGGATGGCCCC # Left flank : CCGCCTGCTGGTCGGATCCCGACGAGGCACGCACCTCGGCCCGCTACTGGAGTGCGCCGCCGCGTCCCCGGAGTCGGTCATCGACCTTGACGACGTACCCGCCGGGCAGCTGCGGGCCGACCTCGAGCAGCATCTGGCCCATCTCCTAGCCGAGTTGCCCGCATACCGGGCGGCGGCTCGGCGTCCGGTGCGCGAGGCCCTGGCCCGGTCGGCGGCCGCCGACCTGAGGCAGGAGCCGCCCGCCGGGCACGGTTGGGGCGCCTTCCTGGTGGCCCGGGTCTACGCCCGGGCCCTGGAGTCCCTCGATACGCCGTCGGACGTGCCGTCCGCGACCGCGGCCGCGCGAGTGCCCCGTACTCTGCCGGACGTCCTCGAACTGGACCTCGGGCAGCGCACCGACGGTGTCCGGCCAGGCTGTTCCCCTCTTCCCTCTCGCCGAAGGCATCAGACCAGCGCGGGGCTGGCCCTCGGCATGCGCGTTCTGTCGGCCGAAGCCCGGG # Right flank : CGAGGCAGCGGCGCCCGGCCGAGGGCGGGCGGTGCTGCGGTGGCTCGCGGCCGGGTCCATCAACGGGGGCCTGGCGGGCCGCCGGTGCAGCGCGGGCCGCCAGGCCGAGGCCGACGCGCACGACCGGTGTGCGGGTGTAGCGGGCGCGGGTGGCGGACGGCTTCGGGCGAGCGGCAGGGCCGGACGGCCTCGGGGCGGGCGGTGAGCAGCGGCCCGAGGCGACGGGCGGCGCGGCGACGCATGGTGCGGCGGGGGCGGTGCGGGCGCTGGGCGCGGACCGGCGGCCGGGCGGCCTGGAGGCGGGGGCGGCGAGTGCGCGGGTGGCGGGGAGAAGACGGACGCAGGTCGCTCTGGCGGTGAACATCCGAGGGTGACGCAAGGCGCGGAGACGCGCGGTGCGGGCTGGGCGCAGCAGGCGGGTGGCCCGGGGTCGGGGTGTGGGTAGCAGGGCCGACGTGACGGCTTAAGGCGGGGGCGAGCGGCTGGAGGGCGCACTGTGG # Questionable array : NO Score: 4.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18610-19313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000214.1 Streptomyces buecherae strain AC628_RSS909 NODE_319_length_62369_cov_56.681252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 18610 30 100.0 31 .............................. GGCCGCTGCGCCTGCCCCTGCCACCTCTCCG 18671 30 96.7 31 .............................A GAGGGGGCGTGGGAACCCGTGGGAAGTTCCC 18732 30 96.7 31 .............................T GCGGCACTAGCGGTGGATGAGGCAATGACTC 18793 30 100.0 33 .............................. CGCACCCCAGGGGCGGCTCGTGAAGTACCGCGA 18856 30 96.7 31 .............................G GCCGGCTCAACCACGCCGGCTACCTCTGGGC 18917 30 96.7 31 ................G............. GGCTCGGCGCCATGGCCGACGCCGGCGACGT 18978 30 96.7 32 .........C.................... GAGGCGCCCCTGCCAGGGGCGCCTTCGGCGTT 19040 30 93.3 31 ............................TG CGCGTGGATTGTGAGCCAGGGCGGGGCCCGT 19101 30 93.3 30 .........................C...G TGATCACGGGGGCGCCGGTCTCGTCAGCTT GG [19116] 19163 30 100.0 30 .............................. GCCCGCTCCGGGGCAGCGCCCCCGGAGCGG 19223 30 93.3 31 ................G............A CCTGCGGAATCAGGTCGCTCGGCACGGGTCC 19284 30 93.3 0 ............T................A | ========== ====== ====== ====== ============================== ================================= ================== 12 30 96.4 31 CTGCTCCCCGCGCGCGCGGGGATGGACCCC # Left flank : GCGGCGGCGGTGAGCGGGCCGCCGGGCGACCGGCGGTCGACGGGGCGCAGGCCGGCGGGGGTCGCGGTGCGGCCGGGCCCTCACCGCCCACCCCGGGCGCCGGTCCTCGCACCGGGTCACCTCGGATGCCGCTGCGCCGCCGCCGTGCTGTCCCGGCTTGGCCGGGCGAGGAGCCGAGACCGTGGGCGCGATCGCGGGGCGTTCATCGCGGCCGGAGGCTCAGGAACCAGCCACGTTTGGCTGACGTCTGCTCAGGCGCGGTTCGTGACCTTCTCGCTGGGGACCTCCGGGACCAGGCCGTGCTCTCCTTTCCTCCGGGGGGATCGGGTCAGTTGTTCTGTGAGCGTTTGAGAAAGAAGAGGAGGAGTCCGGCGTTAGGCTCTGTGACCTGGCGCACGAGAGGGGTTGTGGGTGTTATGTCGATCTTGGGGCATAGGTCGCGTTCTGAGGAAGTTGCAAAAAACCGAGGCCCTGCCCGATAAACCCGCAGGTCAATTGCT # Right flank : ATCGTGGTCGTTTTGAGGTACCACGGCTCCGCCTGCTCCCCGCGCGCGCCGACCTTCGGGCTCTGCAGAAGGACCTCTTCGAGACGCGTGCCCGCCTCCACGACCTGCTCGAGAGCCTGCCGTACTCCGTGGAGCCGATCGAGGGCTGGCGGCGCCCCTAGGGCTACTGGCTTCCCTTCGCCCACCCGTACCCGGACTCACCGGGCTGGTCAGAGCGGGACCAGAAGGAGGTCACCGCCCTAAGGGAGCGCGAACGCGACCTGGCCGAGGCCATCGTCACCCACCCGTTCTGGACCGAGCTCGAGGCATCCGTCCGGCCGAAGGCGCGATCCCATCTCAAGCACGCCGTCGACCACGCCGACAACGAGAGCTAAGAGGCCGCCATGGACACGCCACCCTTCGCCGAGTGGCTGCGCGACCGCTTGATGGCCCGTGGCTACGACCTCGGCCCCCGGGGAGGTGGCCGCAGCCGGTTCGCCGAGCACGCCGGCATCTCGCCC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 21293-21501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000214.1 Streptomyces buecherae strain AC628_RSS909 NODE_319_length_62369_cov_56.681252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 21293 30 96.7 31 .............................C AGGGCCGGCCGGGGAGCAGGGGCCGGCGGGA 21354 30 100.0 31 .............................. GCCCGCCCTGGCTACCGGAAATACAGGCGTA 21415 28 90.0 31 ................--...........G AGGAAGCGGCCACGGAAGCGCTGGTTCGAAA 21474 28 86.7 0 ................--..........TG | ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 CTGCTCCCCGCGCGCGCGGGGATGGACCCT # Left flank : GGGATGGCCCCGCGGACCCCGGCGCGATGGCGGCCCGCGTGACCTGGTCCCCGCGCGCGGGGATGGACCGCACGGTGGCGATGTCGGCGAGTTACGGGGAGATGGCTGTCCGCCGCTCCGCTGGTGGCCGGGGGTTCCCAGGCGCGCTCGGTGACCAGCGCGCCGAGCGCTGCCCCGAGCCTCATCGGCTCGCGCTCGTCACGGCGCACCGTGTGGGCCAGCTGCGGCTTCGCTGTTTGGCTGACGTCTGCTCAGGCGCGGTTCGTGACCTTCTCGCTGGGGACCTCCGGGACCAGGCCGTGCTCTCCTTTCCTCCGGGGGGATCGGGTCAGTTGTTCTGTGAGCGTTTGAGAAAGAAGAGGAGGAGTCCGGCGTTAGGCTCTGTGACCTGGCGCACGAGAGGGGTTGAGGGTGTTATGTCGAGCTTGGGTTATAGGTCGCGTTCTGGGAAAGTTGCAAAAAACCGAGGCCCTGCCCGATAAACCCGCAGGTCAATTGCT # Right flank : GCCGGTCTGCCGTCCGACAGCCGTCCGGCTTCAGATCCGCCGGCCGGCCCTCGGGCCCCGACCACACGTTGCTCGCCGTACGGCTCCGTCACCGCCCATCTGCCTTCCGGTGCCGCTGCTGGGCCTTGCCGTGCTCCCGGTGCCGCGTCCGCGCCACGACCACCTCGGGCCCACCGTCCTCCAGCTCCCGGCCGTCGCGTGCCGGCTCGCTGTTCCGCTGTCTTCCGGCTTGGTCTGGCCACCGTCCGCAACCGCCTCGGACGTGCTCGCCGCCGGTCACCCCCCGGGGGCCGTCCGGCGCCGCAACTGACCGGTCTTCGCCGCGTGCGGGGCGCCAGCCATAGCCACCGTCCGGCTCCCGACGGCTGCCAGCCTGCTACCCCTCCCGTCCGATGCCGTTCGGCTGTCATGGCCGCGCTCCCCAGGCCCGCCCGGTGCCGCCCGGCGGCTACTCACCCTCGCCTGCGGGCTGCTCGGCCGGTCCGCGCCAGCGTGGGGCT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGCGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.20,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 28278-28602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000214.1 Streptomyces buecherae strain AC628_RSS909 NODE_319_length_62369_cov_56.681252, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 28278 23 100.0 39 ....................... TGACGTTCGCGCTCGATGGCAAGACGTACGAGCTGCTCC 28340 23 87.0 38 ..G...............A...A ATGGGACCGGCGGCGCGGTATCTCCCGCACTCTGCTCC 28401 23 91.3 38 ..G...............A.... CGGCGACCGCCGGGGCGGTGTCCAGGCGGCCCTGCTCC 28462 23 91.3 36 ..G...............A.... TCCCCGTCATGCCCGCCAAGCCCAAGCGCACCTGCT 28521 23 100.0 36 ....................... GCTTCAGCCTCGGCGCGGGCGGCGCGGGCGCCTGGT 28580 23 91.3 0 G.....................C | ========== ====== ====== ====== ======================= ======================================= ================== 6 23 93.5 38 CCCCGCGCGCGGGGATGGCCCCG # Left flank : GTCCGGCCTCGGCCTGTGGCCGGTCCACCGTCCGCTGCCGCTGCTTACCGCCGTTCAATCCGGCCCCCGCTGCCGGTCCGCTCCAGACCGGCGTCTCCCGCGGACAACGGCCGCCGCCGTCCCGCTGCTGCCGTACGCCGTGTCGGGCGTCTCTGGCCCGCGGCCCCGGAGTCCCTCGATGCGCCGTCGGACGTGCCGGTCGCGACCGTACTGGGCGCGCGAGTGCCCCGTACTGTGCCGGACATCCTCGAATTGGATCTCGGGCAGCGCACCGACGGTGTCCGGCCAGGTTGTTCCCCTTTCCCTCTCGCCGACGGCATCAGACCAGTCGTTCTGCGTGGTTTGGGGGTGAGATGGTGGGGCTCGGCGTTAGGGTGTGCGGTCTGGCTCGTGGAGGACGCTGTGGGTGGTATGTGGAGTTTGGGTTATAGGTCGCGTTCCGAGGAAGTTGCAGAAAAGCGGGGTACCGCCCGGTAAACCCGCAGGTCAATTGCTCTGGT # Right flank : CTCTCCTTATCCGACGCGACAACAGGGCGGTGACACCCCGTCATCTGCGACGGCCCCGACCTAGCACTGCGCTGGATCTCCGTCACAGTTCCCGGCGAGCCATCCCCCCGCCTCGACGCCGCGACCAGGGGCTGCACTGCGACCCGCCTGAGCGGTGGAGGTATTGCACTGCCCACCAGGCGTGCACACTGTCGTTGCCGGACTCACACAACTTGGCCGCTGCCTCGGCCTACCGCCGGCTCGTACTTCTGAGCCCGCAGTTCCTGCACACGCTCTCAGCGGTTGGTGGACGGGAAGGCGTTGGCACCGGGCACTTCCGCGGGGTTCCCGATCGCCGGGCAGCTGTAGAACTGCCTCGCCCAGTGCCGGAAGAAGCCGATGGGGCCGTCACCCGTCGCGAGCCGCGGGTGGCTCAGGAAGATCTTGTTCTCCCAGATGGGATGTCAGGCCTGTCAGTCCGCCAGAGCAGCGCGGCCGCGGGGTGGGGTCCATCCCCGTGC # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCGCGCGGGGATGGCCCCG # Alternate repeat : CCGCGCGCGCGGGGATGGACCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [1,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 93849-94060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000052.1 Streptomyces buecherae strain AC628_RSS909 NODE_55_length_100836_cov_54.243572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93849 29 100.0 32 ............................. TGCATGTCGCGGGCCGCCGTGTCCGCGCCGGA 93910 29 100.0 32 ............................. GGAAGTCGTACGGACGGTCACGGCTCCGGCAC 93971 29 96.6 32 .....................A....... ATCGCCGCGCGCTCTTCGGCCGACGCCATGTC 94032 29 89.7 0 .....................A....TG. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TACCTCCTCTACCGCTGGGCCCTGCGCCGCGACTGGCGCGCGGGCGCCATCCTGGGCGCCACGGCGGCCGGACTGCTGCCCTGGTTCGCCTACCAGGACCGCACGATCTTCTCCTTCTACGCGGTCGTCTTCATCCCGTTCCTGTGCCTCGCGGTCGCCATGATGCTCGGCGCCATCGTCGGCCCCCACGCCGCCACCGAACGCCGCCGCACCGTCGGCGCGGTCGGCGCCGGCGCGCTGGTCCTGCTGATCGTGTGGAATTTCATTTATTTCTTCCCGATCTACACCGGGCAGGCGATTCCGCTGGAGGCGTGGCGGGACCGGATGTGGCTGGATACGTGGATCTAGCTGGGGTCGGATGATGGGGGCCGCTGGCGCTGGGCGGGCGCGGGGGCGATGGGAGGACTATGCCGGCTTTTCTGGGATTGGCCGATAGGTCGCGGTCGGCGAACGTTGCAAGAATCTGGGCTGCCGCCGCATGAACCCGCAGGTCAATTGCT # Right flank : CATCGACGCTGGCCTCAACTATGGCGGAGCGGCAGCGACGACAGCCGTCGCCCCGACAGAGTGTCAGTGGCATGGTCTACCGTCCAACGCATGGCCACCGACGCGCTTCCCATCAGGCCGGGTGACGTCCACACGCGCGAGGAGATCCAGCCCGTGCTGGGCGGCAGCCTGTACGGCGGCATCGTCCCGTCAGACGAGAAGGCCAACGTGCTGCTGTTCTCGTACGCGCGGGGCGGGGCCAGGTTCGGCTACCACGACGGCTGGCTGCGGGAGGAGGACGAACTCGGGCCGGTCTTCGAGTACACCGGCGCGGGCAGCGGCGACCAGGTTTTCGGCGGCCGGTACGGCAAGGGCAACTCGGCGATCCTCGGCCACGCCGACAGGGGGCGCACGCTGCACCTGTTCATCGCGGTGGGCACGGTGCCCGGCGGCCGGACCAAACGACACCGCTACGTCGGGGCGTTCACGCTCGACGTAGCCGAACCGTACGTGGTGCGGCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17415-17139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000245.1 Streptomyces buecherae strain AC628_RSS909 NODE_563_length_164967_cov_55.507671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17414 29 100.0 32 ............................. GAGAGCAGCGCGCACGGCTAGTGGTCGCCTAC 17353 29 100.0 32 ............................. CTGCTCGCCGCGATCGAGAAGAAGTGAGGCAC 17292 29 93.1 31 .....................A...C... CTCACCGACAGAGCGGAGTGGTCGGTGTCCC GCGC [17279] 17228 29 93.1 32 .....................A...C... TAGAGCAGGGACCAGTCCGCGACCGGTGCCGT 17167 29 75.9 0 ............G.C......T...GGTT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTGGTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CGTCGGGGTGGTCGGCGCAGGCGCACTGGTAGGCGACCCAGCCGCAGTTGGGGCAGCGGCCAGTGGTGATGAGGTCGGCGCGCCGCCAGGCGTGGTAGGCGTGGCGGACGTAGACGCGGGGGTCCTGGTCGCGCGGCCCGCGGTCGCTGTCGAGGAGGTAGATGGCCGCGGCCGCGGCCTCCTCGATGACCTCGGGGCTGGAGGCGGGGTTCTCCAGGAGAAGGCGGTCAAGGGCGGCGGCCCGGCGAAGCCACCACTCACGGTGAGTGAGGCAGTCCTGGTCCGAGGGGTCAGCCGGTTGTTGGGTCCACGCGATCTCGCTCGCGATAGGCGGGGCGAAGGCGTACGCGCGCTCAGGGGACAGGATGGTGATGGCCATGGGCCTCCTCCTGGTGCGGTAGAGGCGAAACGGGCGACCCGTCACACCGTGACGGGTCGCCCGTTTCGCCAAGTTGGGTAAAGAGCTGGAATTGGCGCTGTAACGTCGCAGGTCGGGAAGG # Right flank : CTACTGGGTGGTGATGACGATGGCGGTGGCGTCGTCGCGGTAGCCGTCAGCGTCGGCCTCGGCGGCGGCCACGAGCGCATCCGCCAGGGCCTGAGGGTCGGTGGCGTGCGTGCGGACGGTGGCGGTCAGGGTGTCGTGGTCAGTCTGGTCGTGGACGCCATCGCTGGTGAGCAGCACCAGTGCGTCGGGGATGGTGGCCTGGTAGATGGTGGCCACCGTGGCCGTGGCCAGGCTGGTCTTGAGCCAGTTGTCGTGCTCCTCGGCCAGCTCGACCGCGACGCCGTTGCGCCGTAGTTGGGCTCCGACGGTGTGGTCGTTGGAGTAGAGCCGGAGCCGGGTGCCATCCCAGCCGTAGGCGCGGCAGTCCCCAGTCCAGGCGACCGCGACCACGTCGTAGGCGGGGTTGGCGACCGCAGCGACGGCGACTGCGTTGGCTTCGTCGCCGTCCGCCCCTCGGTCGGCGATGAGTTCGCTGGCAGTGAGGAGCCCGGGAAGTGTGC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15938-15249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000051.1 Streptomyces buecherae strain AC628_RSS909 NODE_54_length_28423_cov_54.358654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 15937 27 96.3 32 .......................C... AAGGTGAGTTGACCTCCCGGTCGTTTCCGATG 15878 27 96.3 32 ........................G.. GGGCACCCCGTGGCTCGTCCGATCCGCTCTCA 15819 27 100.0 32 ........................... CGGTAGCCGATCCCGGTCCGGCTGAACCACGA CC [15809] 15758 27 100.0 32 ........................... TCCACACCGTGGCACGCCCGACCGTCACGGTC AC [15741] 15697 27 100.0 32 ........................... CGGATGTACGGAGCGTCCGGCACGTCCGGCCG TG [15681] 15636 27 92.6 32 ................A......C... TAAACGGATCACTATATGGACAGCCCCCAAAG TA [15622] 15575 27 100.0 32 ........................... GGCACCCGGAAGTGCCGCGCCTGCCGTCGCGC GT [15560] 15514 27 100.0 31 ........................... CGGCCGTCCCGTGTGGTCGGACGAACTCAAC 15456 27 96.3 32 ...A....................... GGCAACGGCTGACGGGCGTCACTGCGGGTGGG 15397 27 92.6 32 ......................A..T. CGGAAGGTCAAGTCGTTGATGGTGGCGTTGGG 15338 27 100.0 32 ........................... GGGGTCCATACGCCGGCTGAGCACGTCGCGCC GG [15322] 15277 27 70.4 0 .............C....CGCCCCA.. | AT [15265] ========== ====== ====== ====== =========================== ================================ ================== 12 27 95.4 32 CTGGTCCCCGCGCGCGGGGATGGTCCC # Left flank : GCGGCGGTCGCGCCAGGGCCGCGCTCCACCCGATCTCGGGCCGGGAGGACGTCGCCCACCACCTCCTCACCATCGCCACCCAGGCGCCCGGCCTGATGATGGTGGAGCGCACGGTCAACGGCCAGCCCGGCGTGGTCCTCCAACTGGACGGCGTCACGGTGTCGGTGATGTCCCTCGACGTCAGCGGCGACCGCATCACCCACATCTGGGGCATCCGCAACCCGGACAAGTTGCGACCGTGGACGGCAGGGTGAGTTGGTGGGGGTGCGGGCGCTGTGCGGGGCGGGGGGCCTACCGGGGGCGGCGTGAGTGTGGGCGGGCGAGCGGGTGGGGTGGTTGCGGGCGTACGTCGTGTGGGTGCGGGGCGGGGTCGATAGCCTGGGCGTATGGATTTACGGGGAGGCACCGTGAGTGGTTCGTCGGGCTTGGGCGGTAGGTCGGAGTCTGCGGAAGTTGCAGAAAACCGGGGTCCGGCGCGGTAAAGCCGCAGGTCAATTGCT # Right flank : GGCCCGACCACCCCCGTCAGTCTTCCGCACTCGGGCGACCCGGCGGCATGCGGATGCCCACCGGCTCCCAGGGGCCGGGCCCGCCCACCCGGCGCGGACCCCACCCCACAGCGGACCCCACCCTGCCGCCCCCGCGCTCCGCGCGGCAGCGTGGTGCGTCAGCGCACCACGTCGTAGATGACCTTCTGGATGCCGTTCGCGTACGCCTTGTGCTCGACCAGCTTCAGCTTCTGCGTGTCCTTGTCCGTGTCGCTGAACAGGCGCTCGCCCGCGCCGAGGAGGAGGGGGAAGACCATCAGGTGGTAGCGGTCGATCAGGCCGGCGTCGGAGAGGCTGTGGTGGAGCCTGACGCTGCCGTGCATGATGATCGGGCCGCCCTCGGTCTCCTTCAGCGCGGCCACGTCGTCCAGCGAGCGCAGGATCGTGGTCGGGCCCCAGCCGTCGACCAGGGACGACTTGGGGAGGGTGGTGGAGACGACGTACTTGGGCATGTCCTTGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20626-20236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000051.1 Streptomyces buecherae strain AC628_RSS909 NODE_54_length_28423_cov_54.358654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20625 27 86.2 32 .....T........--.....A....... GCCCCCCAGGAGGGCAGACACACCTGCACGCA 20566 28 89.7 32 .........-....C......A....... TGCGACCACCCGGCCTTCAAGGTGCAGAAGTT 20506 27 82.8 32 T.............--.....T...C... GGCTTGTCGGTGAGGCGGACCCAGTGGCGCTT 20447 29 100.0 32 ............................. TCGCTGAGGAACCGCGCGATCTCGCCGAGGCT 20386 29 89.7 32 ......G..................C..T GGGTCGCGGTGAAGACCCGCTGGGGCCTGAGC 20325 29 96.6 32 .........A................... AGCAAAACGACGATGACCATTTCGGCCGGGTA 20264 29 89.7 0 ...........C.........A...C... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 90.7 32 CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGTCCCTCGCCCCTGATCCGGAGGCCACGCCGTACACCGTCCGGGCCAGGTGTCTCGCGTGCGACGACCTGTCTCCAGAGCCCGAGCCGTCGGAGTCCATCACGGCCCAACATGAGCGCGCGCAGCGCTGGTGTACGCGCCACGCGGCCCGTGACCATGCGGACGGACGCCACTTCCGCTTCGCCGCGACGGTCACCTTGCGGTGGCGCGTGACGCCTGCGGAGGACATTGGGCCGGCGGCGTTGTGAAGGGTTGCGGGGGTGCCTGGCCGGCAAGTTGCGGGGTGCCCGCTGTGGGTGGCTCGCGGTCGCTGACCTCCGCCGCAGGGTCGTCGGAGCGCGTCGAATCGGCGGGGTTCGGCGATAACCTGTTGAGCCTGGTTAGGGGGCGGGGCGTCTTGGGCTAGATGCGATGAGTGTTGAGTTTGGGTGGAAGGTCGCAGTTCGCGGAAGTTGCAGAAATCCGGGGTTCGGTCCGACAAACGTGCAGGTCAATTGCTG # Right flank : CGACTGCTGTCCCACCCGGACGAAGATAGGAGACCGAATGACCGCATCGGAATCATGGGGCGACGCGGCGAGGGCGCTGGCCGACAAGGTGGCCGCAAACGCTCTGGAGTGGCACGAAGCAGTCAGTGAGACCCCCCGCCACCTGCTCGTACCCCATTGGTGGGAACGCGTGCCGAACAGCCCGACTGAAGAGTGGGAGTTGGTAGCCCACGCCGAAGATTCCAGGGCGCGGATCGCAGCGGTTTACGGTGACGAAACCCTTGTCACGCGCGTCGGCCCCCTGCACGCCGACCACGCGAAGGCGGAACAACGGGCGGCGGGTAGTCCCACCTCGTCCTCGACGCTTCCGAGTCTGATCGTTTCGATGATGCACCGGTTGAACGCGGAACCCGGACATCAGGTCCTGGACGTGGGCACCGGCTCCGGCTATGCGCTTTCCCTCTTCGCGCGACGTCTCGGAGACGAGTACGTGACGAGTGTGGACGTGGACCCGTATCTCG # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24621-24348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000051.1 Streptomyces buecherae strain AC628_RSS909 NODE_54_length_28423_cov_54.358654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24620 29 100.0 32 ............................. TCCGACGAGCTGCGCAAGGCGATCACGACGAA 24559 29 100.0 32 ............................. AGGTGCTTGGTCTGGCTGGAGGAGGCAGCGGC 24498 29 96.6 32 .........C................... ATGACTCATGCACTTGTGGCGTACGTCAGAAG 24437 29 82.8 32 T......T......T.........AA... GAGGAGACCCGCTAATGTCGCTCACCCCCCAC 24376 29 72.4 0 .C...T...A.A..T......GC.C.... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 90.4 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : AGTTCCATGCGCTGCGTTGAGATGCTCGCGCCTGCCTACCCCGCATCTCGGTCATCCACGCGTGCGTATCCGGTGCCACGTCGTAACTGCATAGGTAGAGCGCTTGCCGCCGCAGTAAGCCGCACTCTGCGCCCGTCCAGTCCGCCACTTCGGCACTCCGCCGCAGGCCGTCGAAGAACGCCCGACGTTCGGGCTCTCCCAGCAAAGGACCATCCGGCGTGGGGCTACGTCGACGAGGCATCCCTGGGGGCGGGTGAGGGAGCGCTGCGGGAGGGGTTCCCGTCAGTGCCTGCTGTGGGTGGCATGTGGTCGCCGGCTTCGCCGCAGGGTCGTCGGAGCGCGTCGAATCGGCGGGGTCCGGCGATAGCCTGTTGGGCCTGTCTAGGGGGCGGGGCGCCTTGAGTGGGGTACGGCGAGTGTCGAGTTTGGGCGAAAGGTCGGAGTTCGCGGAAGTTGCAGAAATTCGGGGTTCGGCCTGACAAAACCGCAGGTCAATTGCT # Right flank : CACGCCCCCGGAGGCCCCCACGCGCCGGTGCCTTGTATCCCTACGCGTGCGGGTACTCCAGTGAGGGACACTCGCGTGCCCAAGCCTGCTGGCTGTCCGATTCGGGTGGTGGCGCTCGATGTCGGCGAGACGCTGATACGCGACGATCGAGGATGGGCAGCTTGGGCCGATTGGCTCGGTGTGCCTCGCCATACGCTCTCGGCCTTGGTCGGCGCGGTCGTCGCTCAGGGCAGGGACAACGCCGACGCGGTACGGATGATTCGCCCGGGTATCGACATTGCGGCTGAGCGCGCCGCGATGGAGGCCGCAGGCAAGAGTGAACCTTTGAGCGAGGCTGACCTCTACCCAGATGTACGTCCGGCTCTCACCGCGCTGCGCCAGGCAGGTGCCCGAGTAATCGTGGCCGGGAACCAGACGGCCGAAGTGGCCGAGCGGCTGCGTGCACTGCGGTTGCCGGTGGATGCAGTGGCGACTTCTGGTGAGTGGGGTGTCGCGAAGCC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 28391-28058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000051.1 Streptomyces buecherae strain AC628_RSS909 NODE_54_length_28423_cov_54.358654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================== ================== 28390 29 69.0 30 C.TGTCC.....G.....A.........G CAGCGGCGCGGAGAATTCGGGTGGGTGGTG G [28381] 28330 29 89.7 30 .C.T....................C.... TTCGAGCGGCTCACCCTCATCCTCGGAGAG GGGC [28313] 28267 29 100.0 30 ............................. TGGGAGGTCGACGTTCTCTCGGTGGAGGCG 28208 29 82.8 29 .CCT..G.....................G CAGTGGCGGGGGGTGTCGGGGTTTGTGGT TG [28194] 28147 29 86.2 28 ..AG..................C..C... GTGAAGGACTTGGTGGGGGCTGATCCCG GC [28136] 28088 29 86.2 0 .T.T.................A...C... | G,A [28071,28074] ========== ====== ====== ====== ============================= ============================== ================== 6 29 85.6 30 GGGCGGTCCCCGCGTGCGGGGGTGGTCCC # Left flank : GCGGAGGGACACATCGGGGAGGGGGGTGTTGTTGCGGGGAGTGGTGGGGGTGGGGTGGTGCGGGGGGTGGGGTTGGTCGCCTGGCGGCGGCACTGACGGTGACGATGCCTGCGCCTTGGCGGCGGGCATC # Right flank : TCTTCGTGCTGGCGGACGGCTTACGGGGAGTCCTGGTCCCCACGTGCTGGGTGTGCCTGCCGGTCAGCCAAGCCGTAGTCGATGCAGCATGAGCAGGGCGGCGACCGCGTTCGCCGACCTGATGTCGCCACAGGCGATGAGGTCGGGCACCGTCTTCAACGGCACCCACTCACGGCGTGAAGACTCGAACGCGTCCTCCGGAGGGCCGACCCGGGTGGCGCCCTCCGCCCAGAACACCTGGTGTCGCGAGGTGGAGATCCCTGGCTGCGGGTCCACGGACAACAGGTGCCGCATCGGCCCGGGCCGCCACCCCGTCTCCTCTTCGAGTTCACGCGCCGCAGCCCGGGCCGGGTCCTCGCCTTCGGCGATGCCGCCGGATGGGAGTTCCCATCCCCAGGCGCCCGTGATGAAGCGATGCCGCCACAACAGCAGAACCTCATTCGCTTCGTTGACTACTGCGGCGACGGCCACCGGGCGTAGGCGAATGACGGTGTGGTCCA # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCGGTCCCCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62186-61513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000061.1 Streptomyces buecherae strain AC628_RSS909 NODE_71_length_250358_cov_54.845982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62185 27 93.1 32 ........--................... CTCGTCCAGGTCGTCGCGCACGTCGTCAATGC 62126 29 100.0 32 ............................. AGCGAGAGCGAGAGCGAACACCGCGAGCTCGA 62065 29 100.0 32 ............................. TGCCCGCCGCCCAGCGGGAGTCGGGATGGGAG 62004 29 100.0 32 ............................. GACGGTTCCACCCGATCCGTCGCTACTCCGAA 61943 29 100.0 32 ............................. AGGTCTTGCGGGATCACGGCCATGGTCAGTCG 61882 29 100.0 32 ............................. TTGTCGGCGGCGTCGGCGCTCTCGCCCATCGC 61821 29 100.0 32 ............................. CTCCGCCCCGGGCGCACCAACCGCACCCCCGC 61760 29 65.5 9 ............G..A.CTC.GC.TT.T. GGTGTCCAT CT [61745] Deletion [61723] 61720 27 93.1 32 ........--................... ATGGCGGCCTCGGCCGCCAGGCGGCGGGCGGC 61661 27 93.1 32 ........--................... GGCGGGCGGCGACCCCCGGGTCGCGTGGATGC 61602 29 93.1 32 ..............T.......A...... GCGTTGAGGTAATTATTTGCACGGTTGCCTTT 61541 29 93.1 0 ..............T.............G | ========== ====== ====== ====== ============================= ================================ ================== 12 29 94.2 30 CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Left flank : CCGGGCGGATCACCCAACAGACCCGTCAGCTCCACGCCGAGCCCCTTCGCGAGGGCGTGCAGGGTGGGTAGGCGAGCGCCGTGCTTACGGCGCTGCTCCAGCTTCCGCATCACGTCAACGGACACACCTGAACGCTCGCCCAGTCCTTCTTGGGTGAGGTCAGCGAGGCGACGGAGCTTCGCGATTCGATCGCCCAGATGCTCAACTGCCATGCTGTAGAAGCTACTCCGCTCGGCGGCGGGAGCATGGTTCACCGGGAACGGGCCTACCACGCCGGCGTCGCTCACTAGGTGCTGGGCCCAGCTCTCGACCCGCGTCGGCTCACCATCACGATGGACATGGCACTACTCATCGAGGACTGCATCACAGCGCTAGGCTGAACAGCCTTCCCGCTCGAAGGGGCCGGCATGGGCGATGCATCGAGTTTGGGCGATAGGTCGCGATCAGTGGAAGTTGCAGAAAACCGGGCCCCCGCGAGATAAAGCCGCAGGTCGATTGCT # Right flank : GCGCTCGTGCCAGACCGGCGCAGGCAAGGCAGGCATATTCGACACGTACGCCGACAGCTTCGCGGCCATCTGGAATTCCGCCGTTCCGCTCCGTCAGGAGGGTTAGCTTTGGCCCGTACCGAGTACTACGACGACCCGACCGCCCCCGCACCGAACAGCATGGTCGTGGCGGCCTCCGCCGTGGTAACCGACGATGAGGGGCGCATTCTGCTCCAGCGCCGCCGGGATAACGAGCTGTGGGCACTGCCCGGCGGGGGCATGGACATGAGCGACTCCCTGCCCGGGTGCGCGGTACGCGAGGTCAGGGAGGAAACCGGCCTTGACGTAGAGATCACCGGGTTGGTGGGCACGTACACCGACCCACCCCACGTCATCGCGTACACGGACGGCGAGGTACGGCGGCAATTCAATGTCTGTTTCACCGCGCGCGTGCTTGGCGGAACACTGACCATCTCCGACGAGTCAACAGAATTGCGCTTCGTGGCTCCCGAAGCGGTAGA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.18, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23606-22748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000110.1 Streptomyces buecherae strain AC628_RSS909 NODE_125_length_58761_cov_51.867870, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23605 27 93.1 31 ........--................... CGGCGTGCACGTCTCCCGCGACGACCAAGCC 23546 29 100.0 32 ............................. TTCCGGAGTGGCGCGCACAGCTCGTCGACTTC 23485 29 100.0 33 ............................. AGGGAAAAAGACCTCGGACCTGGCGGTCTCCTG 23423 27 93.1 14 ........--................... TGACGAACGCGCTC Deletion [23383] 23382 28 69.0 31 .CC...T...-....AT.C.CC....... CGCTCCGCCCGCATCCGCAAGCTGGCCTCCG 23323 29 93.1 32 .CT.......................... GGGTGGACCGGCGAAGTCATGTGGAACATCGG 23262 29 100.0 32 ............................. CGGGCGGTCATCTCGGTGACTTGGGCCAACAT 23201 29 96.6 32 .....................G....... CCCGGACCGGTCCGTTGGACCCCGCCACACGG 23140 29 96.6 32 ........A.................... GTGGCGTCCGACGCTCCGACCAGTTCCATCCG 23079 29 100.0 32 ............................. CAGGCCGAAGCGCTTGCCCTTGCGGTTCGAGC 23018 29 100.0 32 ............................. ATGGATGTGCTCCTGTCTGTGGGAGTCCCCGG 22957 29 100.0 32 ............................. CTCGATGCGGAGCCGGGTGATCTCGGCCTGGT 22896 29 96.6 32 .........................C... GGCCCTGGTCGGCATCTCACCTCCGGACCAGG 22835 27 89.7 32 ........--...............C... GGCAAAGGCGGCGTGATCGAGGCGCGGGAGTT 22776 29 86.2 0 .........C.........A....CC... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 94.3 31 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : CCGGAGGCGAACGCCCCGAACGCGGAGGCCACCGCCAGCGGCGGCGATTCCAGCCACAGGATCAGCCCGATGACGATGGCGACCCCACACGCGCCCCGCAGCGCCACCAGCGGCTCAAGTCTGGTGCGTTCGATGGTCAGTCCGGTGCGGGCAGTCTCCTTGAGGGCGCGCAACCAGGTCATACGGCGAGAATACGGCGCTGATCACGGCAAACGTGTGGGGGCGCCTGGGGCGCCTGGGCGGCGGGCCAGGCGGGAGGACGCGCTCCGCGCGTACCGGGCTCGGTCGGGTCGGGCGGCGCCGGCCCCCCTGGGCAGTTCGGGCCGGGCTGGAGTGGGCGGCGCGCGGCGCGCGGGTTCGGCCACTACCGTGGGGGCTGGCCGCCGGGCGCCCCGGCGGTTTGGGGCTTTGGGGGAAGGCGCGGGATGTGCGTTATGTCGCGATCGCAAGAAGTTGCGGAAAAGCGGGTGTGCCCGCGCTAAACCCGCAGGTCAATTGCT # Right flank : CACAGGCAGGTGGCCCACCACAGGGCGGGCCACCCACCCGAGGCGCGCCGCAGGCGATCACCCGTTGGGGGCCTCGCAACTGATGTCCATCAGCTTCATCGGCTTACTGGCGTCGAGCCCGACGTACGCGGTGAAGACCTGGGTGTCCTGCCCCTTGCCCCAGTGCGTCGTCACCGGTGCCCACCCCACACCCGCCGACTGGGCCGTGGTGACCGGTCCGATGTCGATGGCCTGGGGGGTGTTCTGGGCGCAGAGCAGCAGGTCGTACTCCGGCGTCTGGGCGGCCTTCTCTTTGAGTTCCTCGGCCACCAGGTGTTCCCGCTCCCAGGCGCTCGGGCCGTGGTTGCCGTAGAAGCCCTTGAGGAAGTGGCGCACCTCCTTGGCGTCGTACTGGCGGCCGGTCGTCCCGGAGCCGGAGCCCGACTGTCCGGCAGCCGCCACGGGCACGGCGGCGGCGAGGCCGAGCCCGAGCCCGACGGCGGTCACGCAGGTGGCGGCGA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3871-4205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000135.1 Streptomyces buecherae strain AC628_RSS909 NODE_156_length_17827_cov_52.712124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3871 29 100.0 32 ............................. TTTCAGATGAAGGTCCGCGCCGCGTCGACACC 3932 29 100.0 32 ............................. GCCCAGCGTCCCCCGGGGGCACGCAACCTCCT 3993 29 100.0 32 ............................. CACCTGCGCAAGATCTGGGACGCCGACCCCGA 4054 29 89.7 32 ...........A.........A...T... AGGCGGGCGGCGGCCTGCTCGGCCAGTGCAGG 4115 29 96.6 33 ............................T TCGTCGGCGTACTGGAGAGGCCAGGGGCCGCCG 4177 29 82.8 0 .............AAC.....T...T... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.8 32 CTGGTCCCCGCGCGCGCGGGGGTGGCCCC # Left flank : GCCCGGTACTCCTCGGCCGGCACAACCGCCTCACACCGACCGCCATGCTCGATGACCATCTCGGCGAACCACGCGTCGGGACCGTCAGCCAGACACGAGACCCCGCACAGCTCAGCCGGGGCGAACTGGCGGATCGTGTCGGCGAGTAGCGCCCTGACTCTTTTCTCGACCTGCGCTGTAAGCCCACGATGTCCGGTGCTTCCGAGACGCATGAAGATCTCTTCCTGTGAGACTAGGAATACATGTCCCTGAGCCGCTCTTCGGAAGCGCGGACGGCTCTGAGAGGCGCGGGTCACGAGCGCGATGGTGGCCGCGCTGTGGCTGGTCACCCTCGCCGAGGGCGTCGAGCCGAGCGCTGGACCGCGAGCAGGGCGATAGCCTGGAAGGCCTGACCGGCAGGGGGCTGTATGGGCGATCTGCCGAACTTGAGCGATAGGTCGGAGTTCGCGGAAGTTACAAAAAAGCGGGGTGTCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : CGGGCGCCGCCGCGTGAGCACCTATCAGGACGCTTGGTCCCCGCGCGGGGCTGCCCCACCCGCACCCGGTCTCACCCCGCCCCATCACCTCCCCCGCCGCGCCCCCTCGGGCCAGACGACGTCCACGGGAATCCCCATCTCCCGTGCCGCCGCCACCACATCGGCCGTTCCCCCGCCCTTGCCGCTCGGGGGTGCGCCGTCCCACACTGCGACCAGCCGGTCAGCCCGCTCCAGCAGCACCGCGTTGGCGGCCTCGTAGGCAGCCCGGTTCGCCGTCTCGTGGGGCATGACGCGGGTCTCGTGAGCGGCCTGGCTCAACCGGTCGAAGGTGTCCGCGTGGGCGGGCTTGACCTTCGCTTCGCGGTAGTCCCGCGACGGGATGACGACGACCAGGCGTCCGCCCGCCTCCAACACGGCTTCGGCGAACAGCGAGTCCGCTCCGGCCGCGATGCAGGACACGCCCGTCAGCTCGTCGTCGCGATGCTGGGTGATGGCATGTC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9359-9753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000135.1 Streptomyces buecherae strain AC628_RSS909 NODE_156_length_17827_cov_52.712124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9359 29 96.6 32 .............G............... TCCCGGGTCAGGGTCGTGGTGGTGGACGTGGT 9420 29 100.0 32 ............................. CAGCGCCTCGGTGTCCCATTCGGGAACCCACG 9481 29 100.0 32 ............................. TCGGCATCACTCGTCCCCGCGTCTGCGGGGGT 9542 29 100.0 32 ............................. CGGAGGGGCAGCGCGTGGTGGCGGCCTCGAAG 9603 29 100.0 32 ............................. CCCCAGCCCCGGGACGCGGCCGTGATGGGCAT 9664 29 100.0 32 ............................. GGCAGCGGATGCGACGTTGCTCTCGCTCCTGG 9725 29 75.9 0 ...A.....A.C.....C....C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 CTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CACCGAGCAGTCACCGGAACCCGAACCGTCGCAATCCATCACCGGCCAACACCAGCAGGCTCAACGCTGGTGCACCAGTCACGCGGCCCGCGACCACCCCGACGGCCGCCACCTGCGCTACGCCGCCCACGTCACCCTGCGGTGGCTGGTCACCCCCGCCGAGGACATCGGGCCGAGTGCTGGTCCGTAGGCGGGGTGGGGAGGCAGTGCGTGCTGTGGTGTGGGGTGCTGACGCCTGCGGTGGGGAGCGCGTTGGCGGGCGGGTCGGGTGGCCGTGGGTGACGCTGGCTGTGCCGCCTTGCGAACGGGCGGCGTGGCTGGCGAGTTGGTGGCCCAGCAATCTTGTCCGTCAGCCTCGCGCGTGCGAGCGCAGATAGTCTGTGAAGCCTGGCCAGCAAGGGGGCGTTGTGGATGATCTGCCGAGTTTGAGCGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTCCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : CCACCCCACCCCCACCCGAGGCTCAATCAAGCCCCGCTCGTGTCGCCCGCCCCGCGTTGCGTGACTCATAGGGCGGCAGCCACCCACCCGGTACCGTGGTCCGAATGACCACCTCGCGGGATCGAGCGGCACGCAGGACCCGGGGAGCCGGGCAGCGCGACGGCGGCGCCCGTGGGGCGCCGCGCACGCTGGCGGAAGAGTTGCGGGGGCGCCCCGACAGCGCGCTCGAACTGTTGCTGCGCGCCCGGCCTGACCTGCTCAATCCGGTACCGAACGACCTCACCCAGCTCGCCACCAGGGCGGGCACCCGAGCGTCGGTCGTACGGGCCGTCGAGCGGTTGGACCGGTTCGCGCTCCAGGTAGCCGAGGCGCTGGCCGTGGCGCCCGACCCGTGCCCGTACGAGACGCTGCGCGACCTGCTGACCGGCGACCCGGACACGCCCCCGGCGCCGGGCCCCGGCGCGAACGCCGACCCGCACGCGCCCCCGGCGCTGAGCCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14276-14669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000113.1 Streptomyces buecherae strain AC628_RSS909 NODE_128_length_50029_cov_51.001278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 14276 30 93.3 31 ..............C..............C CTCGTCAACTACATCAACCCCCCGGGCGGCG 14337 30 96.7 31 .............................A CCGCGTGGACGAACGTCATCCGCCCCGCCTT 14398 30 100.0 31 .............................. GCTGTGCGGGCGTCTGCGCGCCGTATGTGGC 14459 30 93.3 31 ...A.........................T GGGCCCAGTTCGCACTACCTTGCTACCGGCT 14520 30 93.3 30 ...................A.........C CCAGCAGCCCACGGGGTACTGCGAGATCAC 14580 30 93.3 31 ...........A.................T AGCCCACCGAGAGCGACGGGCGCTGCGGGGC 14641 29 90.0 0 .........-....C..............T | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.3 31 CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : GCTATCACGAGTACGGCGGTGCCGAGACCCTCGTGGTCGAGCAGGCACCGGACCCGCACGCCGGGCCCGGCGAGATCCGCATCCGGGTGGCGGCGGCCAGCGTCAACCCCGTCGACTGGAAGGTGCGCTCCGGCGCGGTACGCGAACTGCTGCCCGTCGACCTGCCCGCGATCCCCGGGCGCGACGCCGTGGGCGTGGCGGACGAGATCGGCGCGGCCGTACGGGGCATGAGCGTCGGCGACCGCGTCTTTGGCCTCGGCGGCGTCACCGGCGCCACCGCCGAACTGGCCGTCCTCTCCGCCTGGGCCCACGCCCCGGCCACCTCGAGGGCTGGGTGTCGTTGCGTGGCGGCTTCGCGCGTGGGGGTGGGGATAGCCTGGGGGGTCTGGTGAGTGAGGGGGAGTGTTATGGGTGTTCTGCGGGACTTGGGTGGTAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGGCGCGCGGTAAAGGTGCAGGTCAGTTGCT # Right flank : TTCATCCTTGGCAAGACCAAGCTCGTCAGCGCCTGGCCCCCGTGCGGAGATAGTCATGCGAGGACCCGAGCCTGGCGTCTCGTATTCGCCCCCGTGCAGGCAGACCAGCGAGCTACGAGCCCGAAAAGAACGCCTTCGTCCCGGCAAGCGCCGCGTCCCACGGAAACGGACACTTCTGGCCCGGCTCGTTGGGAACGAACCCGCCGTCCCCGTACAACACGCTGACCCCTACCGCACGCAGCTCCGCGACGGAGCGTGCGAACTGGGGATGCTGGGCGTAAGCCGAGTTCACGCACGGCATCGTGATCAGCGGAATGCCCTTGCCGATGCCCTCGGCTACGACACCCACCGGAAATGACGATGTCAACCCCAACGCCCAGGCGTCGATGCTGTTCATGGTGATCGGGGCGAACAGGATGGCATCGGCTCTGGGCCAGACATCAGCCTCACCCGGGCGCTTGTACCGGGACCGTACGGGGTAGCCGGTCAGCTCTTCCAGC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18100-18373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000113.1 Streptomyces buecherae strain AC628_RSS909 NODE_128_length_50029_cov_51.001278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18100 30 96.7 31 .............................T GACGTGGGTTCACGCGGCATCACCGCCGATG 18161 30 100.0 31 .............................. GGGGCGCAGGGGTCCACTGGGCCTGCGGGCC 18222 30 96.7 31 ............................T. TCGTACGCCAGGCCATCCAGTCCCCCAATTT 18283 30 96.7 31 .............................A CCCCCCTCGGCGGCAGCCCAGTGATCCCACC 18344 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 5 30 97.4 31 CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Left flank : AGATGAGTTTGGCCCCTGATCCGGCGGCCGATCCGTACACCGTCCGCGCCACGTGTCTTACCTGCGCCGACCAGTCGCCGGAGCCTGAACCGTCGGAGTCCATCAGCGGCCAACACCAGCAGGCTCAGCGCTGGTGTACGAGCCACGCGGCCCGCGACCACCCCGACGGACGCCACCTGCGCTACACCGCCCACGTCACCCTGCGGTGGCTGGTCACCCCCACCGAGGACATCGGGCCCATCGCACCGTAGGCGAGTGGAGGTGGGGCGGGTGATGAGGCGTGCAGGCGCGCGACTTGGTGCACCGTCCATCGATGGCCACGCTTCAAGAGGCTGGTGTTGGCGTCCGGCTCACGTGCGGAGCGGCTTGCGGATACGCTGCGAACACCGTCTTGCCGGGAAGTTGAGGTGAGCATCATGCCGGGCTTGGGTGATAGGTCGGAGTTCGTGGAAGTTGCAAGAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : GGGGGACGTGGGGTCATAGCTTCCTCCAGGGCCTGGTCCCCGCGCGCGCGGGGATGGCCCCCGCATCAANNNNNNNNNNGGGGGACGTGGGGTCATAGCTTCCTCCAGGGCCTGGTCCCCGCGCGCGCGGGGATGGCCCCCGCATCAACCAGACGATCTTCGATCTCCTGGTCTGGTCCCCGTGCGCGGAGGTGGACCCCGCGCCGCGATCTCGCATGGGCCTCTACAACCCTGGTCCCCGCGCGCGGGGATGGACCCGTGATCCTGAGCAACACCGAGACGCTTGGCCGCTGGATCCCGCGCGCGAGGTTGGACCCGTCGTCGCGACCACCTTGCCTTCGAGCCGCCCCTAGTCCCCGCGTACGCGGGGATGGGCCCAACTCCGCAGCAGCATCCGAGACGGAGCCGACCTGGTCCCCGCGCGCGGGGGTGGGCCGCCCGCCGACGGTGGCGGCGACAACAGGCACAGGAAGGCTGTCGATGGCCAGCCCGCGTGGGAC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 22659-23244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000113.1 Streptomyces buecherae strain AC628_RSS909 NODE_128_length_50029_cov_51.001278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 22659 30 93.3 31 ............................TT GCCACGGAAGATACCGGCCCCGGGGGGATGT 22720 30 96.7 31 .............................T CGACCTCGAATCGGCGCGCGGCCGCGTGCAT 22781 30 96.7 31 .............................A CGCGGGACGGCGAGCGGATGCCGAGCGACTT 22842 30 100.0 31 .............................. GCCTCCGCCAGCGCGGCGGTCCGGATCGTGT 22903 30 100.0 31 .............................. CAGCGGCGGACTTCGGCGCCGGCTTCCGCAT 22964 30 93.3 31 .........................G...A TCTGCAACAGGGTCGACAGGAGTTCGGTCGG 23025 28 90.0 27 ................--...........A CGCCCCCCCGCCGTCCTCACGCCCGAG 23080 28 83.3 31 ................--......AC...A GGCCGGTGAGCCTCTGACCGTCGCCGACGCC 23139 29 73.3 46 .C...........A.......-CACC..T. ACCCACCCACCCCCTCCCGACACACATCCCGCACCTCGCCCAACGG 23214 30 63.3 0 ....AA....GC......TACG.C.C.A.. | A [23228] ========== ====== ====== ====== ============================== ============================================== ================== 10 30 89.0 32 CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Left flank : CCCACAGGTCGACGTCAACGAAATCATCGTCCGCCCGGCCGCGAGTGCACAGTGAGTCTCGGTGGTGGTGTTCGTGTCGCCCGTGGGCGATGTCGACCGCGCTGATGCTGGTCTGCACGGACCCGCCCCGGCCCGCCTCGTGACACGCGACTTTCTGAGGGACGGGAGCCTTGGCGCTACGTCATGGCGGGTCCAGCCTCCTCGCCTCGGTCGCCGGTTCGTACGCCGTCCGGGTTTGCGTGCTGTGCCTGGCCTGACGCATGTCGCGTCAGCGGGCGGCCGAGTGAACCGGGCACCGCCAGCAGGCAGTTGTGTGCCTCTGGGGGCGCGGTTGGTGTCGGCAGTCGGGCTGCTTGTGGGGGTGACCTGCGGATAGGCTGCGGGGGCTGGCGCGTCAGGAGGTTGAGGTGAGCAATATGCCGGGCTTGGGTGATGGGCCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : CGCGCCGACGTTGGAAGTCGGGGTGCTGACCAGTGCGCTGGAGGAGCCCAGCTCCCGCAGGGTGACCGCGGCGGCGAGGGTGATGGCCTTGCCGTAGCCGCGGCCTCGGTGTTCGTGGTGGACGCCCATCGGCTCCAGCACTCCGGGCTTGCCCGGGCCCGCCGACCAGACGGTCACCGTTGCCACCGCCTCGCCGTGGGCGTCGTACGCGAGCAGGCAACGGGCGTCGGCGTACGGCAGGCCGGCGGCCATCGCGCGCCAGCGGTCGGGCGTGAACGTCGACCCGCCGAACGACGCCCGCTGCACGTCGGCTCGTGCCCGCGCCCGCTCCGGGCCGACCACCTCGATCCGTACGCCCGGGTCCTCCACCGGCTCCGTGAGGTCGCGGCGCAGTGGTGTCCACGGCTCGTCGGGGAGCCAGTCCGCATCGAGCAGCAGGTCCTGGAGCACCGCGTCCATCGGGGCCTCGACGCACACCCGTTCCGCCGGCAGGACGCCGC # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11525-10459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000157.1 Streptomyces buecherae strain AC628_RSS909 NODE_195_length_26544_cov_50.082016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11524 29 100.0 32 ............................. GCCAACAACGGTGCCCGACGCGTCCGAGAAGC 11463 29 100.0 32 ............................. GGCGTCGAGTTCGGCGCGCGCCTCCTGGGTGG 11402 29 100.0 32 ............................. TGTTCACGCCGTCCGTGGTCAGGTCCTGGCCG 11341 29 100.0 32 ............................. TCCACCGACGCAGAAGGGTTTCGGCTGGTCCA 11280 29 96.6 32 ............................T GATGCGGTGACGCCAGTACGCCTTGATGCGGT 11219 29 100.0 32 ............................. GACGGCTAGCCCTGCCCCCGGGACGACACATG 11158 29 96.6 32 .................A........... CGGCGACCGGCCGGCAGATCGGGATCACCGCC 11097 29 100.0 32 ............................. CTCGGCACGAGGGCCGCCGGCACGGAACGCGC 11036 29 100.0 32 ............................. TGGTGGGCCGCCAGCTCGATGGCCGCGCTGGA 10975 29 100.0 32 ............................. GCGCCCGGGCCTTCTCGGGTGCCTCGCCCTCT 10914 29 100.0 32 ............................. CTGCCGCACCACACCGTGCGCCTCACCCACAA 10853 29 100.0 32 ............................. AGCCCTGGGTGCGCGAGGGCGGCGAGTGGCGG 10792 29 96.6 32 .........................C... GCTTATCCTTGGCTGAGGTGACCACGCGGACC 10731 29 100.0 32 ............................. GACGCGGCCGGGAGGCACATCCTCACCGCTCC 10670 29 96.6 32 ............................T CACCCCCGGGACCGATGCCCGCACCGCCCGCT 10609 28 89.7 32 ....-.........C..........C... GCCGACCGCGCCCAGGCTCAGCCCACCTGCCG 10549 29 89.7 31 ...........A..C.........C.... GAGGCCGCCACGACGGCGGAAGCGGGCTCGC 10489 29 82.8 0 .............AC......C.TA.... | CC [10463] ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.1 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : ACGCCGTGGCCCCGCCCGAGAGCGGGATCAGCTCATCGAGAGGGCCCGAGCACCAGGACCGCGCCGGCGGAGGAGGGGCAGGAGACGGCTACTGGAGAGCGACGATGTGGGTTTGGGTGCCATCGCCACGGTGGTACCGCGATGGACGACGGTCGTACGGCCTCAGCCGTCTCGGCGTTGAGTGCGTAACGACTCGACGCGGCTCGCCGCGTTTCGGGCAGTCACCCACGCGCGCATTGCTGTCGCGGGTCAACACGTTGAACGGTAGAGCGGCGTTGGTTCTCACCCACGAACCCGGCTCTCGATCGGATCGACTCATCATCACGGTGAGCGTGGCACTGCTCATCGGGGAAGCTGCTGAAGCGCAACGCTAGGCTGAACATCCTTGCTCGCCGGAGGGATATGACATGGGCGATTCGTCGTGGTTGGGCGATAGGTCGCGATCGATGGAAGTTGCAGAAATCCGGGGTCTCGCGCGGTAAAGCCCCAGGTCAATTGCT # Right flank : AGCGCCGACAGCCCCCGACAGCCCCAACCACCCACCCGCCGGCGCGGTGCGCCCCCACCGAAGGCCAGCGAGCCGCCAGCGACGCACCGCACCCCCGGGCACCCCGAGTCGTGTACGCGGCGGCCACCTCAGCCCCGACGCCCCGCTGACACCCCACCGAGCCCCGCAACAAGACCGGCCCCGCCAACCGCCCAGCACCCCACCCAGACCGCCAATCCCCCCGCCCCACAACCCCGGCGCCCGCGCATGCCCCGGCGCGATCTTCCTCTACCACTGCTCGACCGTCATTACCTGGTCAGAAGAGATCCAAGTTTGTGAATCAATTCACACCTACCCCTTGGCCGGGCCCTGTTTTCCGTGTTGAGATGCGCGCACGACTTCCGGCTCGATGGCGCGCTTGGGGAGGGCAATGTGGCGGACACCGCCATGTCACGTTCTGGATCGTCGGATTCCGAAGGAGAGCCAGGAGGCGGGCTCCATGCCGGACTGTTGGACGACCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000160.1 Streptomyces buecherae strain AC628_RSS909 NODE_198_length_169_cov_42.579880, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 27 27 93.1 34 ........--................... TGACGAACGCGCTCCCCGTCTCCGGCGCATGCGC 88 29 100.0 31 ............................. CCCTCACCATGCAGTATTTCAAGCCCTTCAC 148 29 100.0 31 ............................. CGCTCCGCCCGCATCCGCAAGCTGGCCTCCG 208 29 93.1 0 .CT.......................... | ========== ====== ====== ====== ============================= ================================== ================== 4 29 96.6 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : AAGACCTCGGACCTGGCGGTCTCCTGC # Right flank : GGGTGGACCGGCGAAGTCATGTGGAACATCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17112-16287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUD010000020.1 Streptomyces buecherae strain AC628_RSS909 NODE_21_length_71464_cov_52.375168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================================== ================== 17111 29 72.4 182 T...C.T......CT..A.........GG CGCCGGCCTGGGCTGCTGCGTCGCTCGCGAAGTACGCCGCTTACGGGCTGGCCGATAGCCTGGGGGCTCGGCGGAGGGAGGCGCGGACGGCGAGTGATTCATCCCCTATGCCCTTGGTGCCGGAATTTCGGGAAGTTGCAGAAAACGGGGTGGGCTCCGGGTAACGCCGCAGGTCAATCGCT T [17086] 16899 29 96.6 32 ........G.................... CGACAGCATGAGTACATGACTCCACGGGCGAT GGG [16876] 16835 29 100.0 32 ............................. TGTTCGGGGCCCGCCGGTATAACCGCCGGACC 16774 29 96.6 32 ................C............ CAGCAGCGCGAGGGCGGCTACTCTCGCGCGTT 16713 27 86.2 32 .....T.............--.......T GACATTCCGAATGTGGAATTCACCGGCGACGT 16654 29 96.6 32 ................C............ GGTCCGCCGCCGACCGGAGGTGACGCCGCCGG 16593 27 89.7 32 ................--..........T ACGGCCGTGCGCTCGGCCTCGACGTGGTGACG 16534 29 100.0 32 ............................. CCGGCGCGGAACTGGCGCCCGGTGCGCAGGTC 16473 27 86.2 32 ...................--.C..T... GAGCACAAGGTGTTCCCGCCCGCTCCGGACAT 16414 27 89.7 71 .....T.............--........ GGCGCAATCGTCGGAGGGCAGATCAGGGGTGCCTGGTCCCCTCGCGGGGATAGTCCCGCCCAGAGAATGCT 16316 28 86.2 0 ........T.........AA-........ | GA [16291] ========== ====== ====== ====== ============================= ====================================================================================================================================================================================== ================== 11 29 90.9 51 CTGGTCCCCGCGCGCGGGGGGATGGCCCC # Left flank : GCTAACGCGCTCAGTTCTGGGTGGCGCCGCACTTGCGGCAGCGGGTCTTGCCGCTCCAACCGATCCAGTCGTGATCACATTCGCTCAAGGTGTGCCACATGCCCAATTCCCCTTCTCCTGGCCTTACTTTACGGACCGGCTAGCCCCTCCCCGCGAGGGTCGCTGACGCCGTTGGTTGGTGGCTGGCGTTCCGTCGGTGCCGTTTGACTATCGCTCGTCGACCGTTACAGATCGACTTCTTTCCTTGTCCTTCCCCATTTCGACCGCCTACCGCACGGATGTCGCACATCCGGTTGTGAGTGTTGCCGACTGCCGCCGGAGGGCCCGACGTTGCGTAACCGGCCACTTCCGGAGTGTTCCCCGGCCGCCCTCCCGACTCTGCCGTCGAAGCGCCTGCCGGCCAACGCGGCTCGCGGGGCGGGCACTTCGCGCCTTTGCGCGCCGGGCGCGCCTTCGCCGGGGGTCGGGTTGCCGTGCCGGGGCGGCACACGCCCCCTCGC # Right flank : CTGCCCTCCGTCCTCACAGGACCTCCCCGCCCCGGCCCACCACGAACGCCGGCGTCTTGCCCAGTGCCGCGCTCAGCGCGGTGGTGGTGCCGATCTCGTCGGCAAGGTCACCCGCGTTGGCCCAGCGGCGTTCGTGCTGGCAGTCGTGGGGGCACGGGGAGGTGCTGTGGTCGGTCACGTGGACGTCGTCGCCGTCGGTCCAGCCGCCGTCCACGATGATGACCAACTGCTCCGGCGCGTTGCCCGCAGCCGGGCGCTGGTCCAGGGTGAGGGCGCGGTGCACGGTCGGCAGCTCAAGGCCGAGGGCGTACGCCGCGCGCCCGGCCGCGGACATGATCCCCTCGCCGGCCCGCAACACCACACCCGGGAGCTGCCACGGCGTCCCCGTACTCCGCACCTGGAGCACGCGCGGCCAGCCGTACGAGAAGTCGGCCGGAGCGGACGGGTCGCGGGGCCGCCACACCAGTACGTTGACGCGTACCTCGCGCCGGCTCATGCCG # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.74, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGGGATGGCCCC # Alternate repeat : CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //