Array 1 49620-44909 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJR01000020.1 Acinetobacter baumannii strain NFAb1 3443_DNA1_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49619 29 86.2 31 ....G.......CC..............A GCCACGTCAACAGCAGCATTGGCATTAGTAA 49559 29 89.7 31 ....G.......CC............... CAAGTGCAGATGCAGCCTAATTATTCTTCTT 49499 29 86.2 31 ....G.......CC..............G CCAACCGTTGAAAGCTCTGTGGCTTTCTCAA 49439 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 49379 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 49319 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 49259 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 49199 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 49139 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 49079 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 49019 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 48959 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 48899 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 48839 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 48779 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 48719 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 48659 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 48599 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 48539 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 48479 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 48417 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 48357 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 48297 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 48237 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 48177 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 48117 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 48057 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 47997 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 47937 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 47877 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 47817 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 47757 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 47697 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 47637 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 47577 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 47517 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 47457 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 47397 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 47337 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 47277 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 47217 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 47157 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 47097 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 47037 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 46977 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 46917 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 46857 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 46797 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 46737 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 46677 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 46617 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 46557 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 46497 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 46437 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 46377 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 46317 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 46257 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 46197 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 46137 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 46077 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 46017 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 45957 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 45897 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 45837 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 45777 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 45717 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 45657 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45597 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 45537 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 45477 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 45417 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 45357 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 45297 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 45237 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45177 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 45117 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 45057 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 44997 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 44937 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 79 29 92.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 54710-56772 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJR01000020.1 Acinetobacter baumannii strain NFAb1 3443_DNA1_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54710 28 100.0 32 ............................ TGAAATACCTTTTCCATATCAGGTTCTTGACC 54770 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 54830 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 54890 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 54950 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 55010 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 55070 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 55130 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 55190 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 55250 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 55310 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 55370 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 55430 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 55490 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 55550 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 55610 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 55670 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 55730 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 55790 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 55850 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 55910 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 55970 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 56030 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 56090 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 56150 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 56210 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 56270 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 56330 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 56390 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 56450 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 56510 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 56570 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 56625 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 56685 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 56746 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.4 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //