Array 1 273-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRCE01000015.1 Micrococcus luteus strain VTM4R57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272 29 96.6 32 ............................C CAGTCCCAGTTCGAGGTCCTCGCCCCGGCGTT 211 29 96.6 32 ............................C CAGTCCCAGTTCGAGGTCCTCGCCCCGGCGTT 150 29 100.0 32 ............................. GGATCAACCGCAACCAATACGTCCCCGTGGAC 89 29 100.0 32 ............................. CCACATGGACGAGAGCATCCCCTCGGACTGTT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCT # Left flank : TCGCTATGGAGCGGCCGAGGGGGCCAGGTTGTCCCGGGCGGCGTGAGCTATGGGGACGAATTGTGATGGTGCTCGTTCTGACAGCTGCCCCGGCAGGGCTGCGAGGCGAACTGACTCGGTGGCTGATGGAAGTCGATGCGGGCGTTTTCGTGGGGAACCCCTCTGCCCGCATCCGGGAGGAGCTCTGGAAGAAGACCAGAGAATCAATCAAAGAAGGTCGTGCGTTGTTGATCTACTCGGCGGCCACGGAGCAACGGCTCCGCGTTGAGACGCACCGCCACCACTGGCGTCCAGTTGACGTGAAGGGCCTCACCTTGATGAGACGTCCACTGCCGGACGGCCCGCCCTCCATGGAGGCCCAGAGACGGACTGGATGGAGTGTTGCCCGTCGAGGGCAGCGTGCGTTGCGACCGTCGTGGCGACGAGATCAACACCGCGAAAGTGAATGATTCGTCTGGGCTGATGAGTCAGTAGGCTAGTGATTGGGCCAATTCTCGAGT # Right flank : C # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24605-24092 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRCE01000020.1 Micrococcus luteus strain VTM4R57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24604 29 100.0 32 ............................. GGCGAAGCGGTTGGGGTGTCGTCGGTCGATGC 24543 29 100.0 28 ............................. CTGGTGCTGAATCTCCCTGATGACGAGT 24486 29 96.6 32 ............................A AGTCATCGCACAGGAAGAAGCGGATCCCGTTG 24425 29 100.0 32 ............................. TTCCGGATGCCGTCCCCGACCAACGGGATGCA 24364 29 100.0 32 ............................. AGGTGGTGCGCGAACCCTGGTGTGCCGGGCTT 24303 29 100.0 32 ............................. CACGGTGGCCCCTGCTCGAGGTGTCGCAGCTT 24242 29 100.0 32 ............................. CTGACCGCTGATGAGGCTGCGACGAACATCGC 24181 29 100.0 32 ............................. TGGGGGTGATCCAGCTCAAGCCAACGGGCCGG 24120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : | # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGATCCGTGCTCCCCGCGCGAGCGGGGATGAGCCCTCCCGCCAGAGGGCCGCGCCGGACTCTCCTGCGTGCTCCCCGCGCGAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //