Array 1 3292683-3288752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015364.1 Acinetobacter baumannii strain 3207 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3292682 29 86.2 31 ....G.......CC..............G ATCGTAATCATGCCGTGATAGATACCGCCTT 3292622 29 86.2 31 ....G.......CC..............G CACCCGTGGGGATAGATATCGATCAAGTACG 3292562 29 86.2 31 ....G.......CC..............A ACTTCGAGCGCTTGTTCGTACGTTTGGATAT 3292502 29 86.2 31 ....G.......CC..............A TTTTATACGTACCTCACAATTACGCCAATCC 3292442 29 86.2 31 ....G.......CC..............A CTTTGCAAAGCTGCAAAAGCTTCAACATTAT 3292382 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 3292322 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 3292262 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 3292202 29 89.7 31 ....G.......CC............... TCCGCAATACAAATCACTGGATCAGCCAGGT 3292142 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 3292082 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 3292020 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 3291960 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 3291900 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 3291840 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 3291780 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 3291720 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 3291660 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 3291600 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 3291540 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 3291480 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 3291420 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 3291360 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 3291300 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 3291240 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 3291180 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 3291120 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 3291060 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 3291000 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 3290940 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 3290880 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 3290820 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 3290760 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 3290700 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 3290640 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 3290580 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 3290520 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 3290460 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 3290400 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 3290340 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 3290280 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 3290220 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 3290160 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 3290100 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 3290040 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 3289980 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 3289920 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 3289860 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 3289800 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 3289740 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 3289680 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 3289620 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 3289560 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 3289500 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3289440 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 3289380 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 3289320 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 3289260 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 3289200 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 3289140 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 3289080 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3289020 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 3288960 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 3288900 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 3288840 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 3288780 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 66 29 93.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3297773-3299835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015364.1 Acinetobacter baumannii strain 3207 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3297773 28 100.0 32 ............................ AATCCAAAGGTGGGCGGGTCTTATCTTTAATA 3297833 28 100.0 32 ............................ ACTGAGGAAGGGAAGGATATCATGCGCGAGGC 3297893 28 100.0 32 ............................ ATAAAAGAATTGCTCTTGGCTTTTATTACGCT 3297953 28 100.0 32 ............................ AATACCTCTAGCCAAGGCGGTTGGAGTGCCCC 3298013 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 3298073 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 3298133 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 3298193 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 3298253 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 3298313 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3298373 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3298433 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 3298493 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 3298553 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 3298613 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 3298673 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 3298733 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 3298793 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 3298853 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 3298913 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 3298973 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 3299033 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 3299093 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 3299153 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 3299213 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 3299273 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 3299333 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 3299393 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 3299453 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 3299513 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 3299573 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 3299633 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 3299688 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3299748 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3299809 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.4 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //