Array 1 27898-29847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS974444.1 Streptococcus thermophilus strain N4L chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27898 36 100.0 30 .................................... TACATTAGGTATAATATGGTTTGCTTGATA 27964 36 100.0 30 .................................... TGCAGTGTTGGACACAAACCATTAAAAGAG 28030 36 100.0 30 .................................... AAGCCGTTCTACAATTACAAGAGTTCGGAA 28096 36 100.0 30 .................................... ATTTTTTAAGAAAATAAAATATAAACGTGC 28162 36 100.0 30 .................................... CGTGGCCTGACCTCTATTTTTTGTTTAAAA 28228 36 100.0 30 .................................... AAACGAATTGCATGACCTTTGGGTTGCTCA 28294 36 100.0 30 .................................... TATTAAAGGTCCAGAAGGCCTTTCAACTGA 28360 36 100.0 30 .................................... ATAGAACACTACGGAATATAGTAGGTCGTG 28426 36 100.0 30 .................................... CCATCAGCTCCCGGAAATCCTAACGGTAAT 28492 36 100.0 30 .................................... TTGGATTGTTTGATTCCAGCCCAGCACGCT 28558 36 100.0 30 .................................... CAGTGGTGCGTAAATAACAGGGTCGCCTTT 28624 36 100.0 30 .................................... AGTATCGATGACAGACCGATACACTTTGGG 28690 36 100.0 30 .................................... TGGTTGATTTATGGCCGTTCTTGTACATCG 28756 36 100.0 30 .................................... ATTGACTTACTCAATGTTTGGATCGCGTAA 28822 36 100.0 30 .................................... ACAACAGTTATATTTGATGAGTTCTTGACT 28888 36 100.0 30 .................................... TCGTTCTACTGTTAAACCAATCTTGAAACA 28954 36 100.0 30 .................................... TATATTCGTCTGGTTCTAAGTATTTATTCT 29020 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 29086 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 29152 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 29218 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 29284 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 29350 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 29416 36 100.0 30 .................................... ACGGTCTGTATCGAAAAAGACAACTTGGCT 29482 36 100.0 30 .................................... GAACTTTCAGCTTATAACACGCATAAGAAC 29548 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 29614 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 29680 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 29746 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 29812 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 494636-494383 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS974444.1 Streptococcus thermophilus strain N4L chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 494635 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 494563 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 494487 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 494412 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 746287-742556 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS974444.1 Streptococcus thermophilus strain N4L chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 746286 36 100.0 30 .................................... TTTTCAATCATTTTACTTACTATTTCCTTT 746220 36 100.0 31 .................................... AAATTCTATTTATTCAAGGAAAGGCACAGCA 746153 36 100.0 30 .................................... CCAACGGTTAAAAGACAGGACTTATGATGA 746087 36 100.0 30 .................................... CGTCAAGTTGGCGGAATGTTTGACTGGATT 746021 36 100.0 30 .................................... ATTCAAGTTGAAAAGGACTTCAACAGTCCA 745955 36 100.0 30 .................................... TCTTGGAATTTCTGTTTTACTGCTGGTGTA 745889 36 100.0 30 .................................... TAATCAACAACAGAAAGCACCAAACTTTGC 745823 36 100.0 30 .................................... AAGAAGCCAGTCGATGAGGCTAAAAATTGG 745757 36 100.0 30 .................................... GAATTGGGCTTGCATAGTGACCAAGTTATT 745691 36 100.0 30 .................................... TCATTTATCAAGAGAACTTCCCACAACGTG 745625 36 100.0 30 .................................... TGTTGATATTGATTGGAGCGCTTATGTTTT 745559 36 100.0 30 .................................... TTGACCAAGCTACAACACGTTTGGCGGCAT 745493 36 100.0 30 .................................... TATTTTCGGATGAGGTACCCAACTATAAAT 745427 36 100.0 30 .................................... TTTTAAATGTATCTGTATTAGCACCTGCTG 745361 36 100.0 30 .................................... GAATACGACAGAAATTATCGGCAACATCTA 745295 36 100.0 31 .................................... AAAGCTGGGATGAGCATTGGGATAAGACCAA 745228 36 100.0 30 .................................... ACCAATCCTAGCGATTATTCGTGGACACGG 745162 36 100.0 30 .................................... TGTTTCCATACCATCAATCATGGCTTGTCC 745096 36 100.0 30 .................................... TGTAATGGTTTAACTTAGTGAGTTCAACCG 745030 36 100.0 30 .................................... TCTACGAGGATGAAAAAGGTGAGCTTAAAA 744964 36 100.0 30 .................................... AGACTAATTAATTTATTAATTGATGTAGAT 744898 36 100.0 30 .................................... GAACCCACTTTGTTCTTTATAGTAGTTAGT 744832 36 100.0 30 .................................... TTGAAACGCTATCCAACAGCTAAGCAAGCT 744766 36 100.0 30 .................................... CAATATAGTAGTGTATTTACTGATTATGTT 744700 36 100.0 29 .................................... GCCTCACCCGAGAAACGTTCAAAGGTTTT 744635 36 100.0 30 .................................... TCCTGGCGTGTATTTTGGCTCTATAGTTTT 744569 36 100.0 30 .................................... GATATGAAATCACAAGTAATGAGCCTAGCA 744503 36 100.0 31 .................................... CAAACAGTTACTATTAATCACGATTCCAACG 744436 36 100.0 30 .................................... ATATACGGACTCATCTAGTGAAACTGGGTA 744370 36 100.0 30 .................................... GAATCTGTTAAAACATTGATTTTTTATATT 744304 36 100.0 30 .................................... TGTGCCAGCGTCATTCAAAGCAATTGCTGA 744238 36 100.0 30 .................................... CAAAGCTATCGAATATATCGCAGAGGCAAG 744172 36 100.0 29 .................................... TCTTTGTGATATAAATGAAAAAAAGACTA 744107 36 100.0 30 .................................... CAAGCGTAAGTTTTACCGTTAGAACGTTCA 744041 36 100.0 29 .................................... GATAGCGCCTTTGAATATTAATGGTGTTC 743976 36 100.0 30 .................................... TAGACTTTACTAATTCTCAAGTAAATATAT 743910 36 100.0 30 .................................... TTCTTTCAGGTATGAAATTAGAAACACTTG 743844 36 100.0 30 .................................... TTTCACAGTCAACACATCTCCGACACGCTT 743778 36 100.0 30 .................................... ATGAGTTGGTAGATGTTAAAGCATCAACTG 743712 36 100.0 30 .................................... GTATATACAGAACTTGGAGTTTTAACGCCT 743646 36 100.0 30 .................................... CATACACCACCAGCAAAGTCTTTACCAATG 743580 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 743514 36 100.0 29 .................................... AGACCATGAAGGAAGGCGTTGACAAATTC 743449 36 100.0 30 .................................... AGAAATTCATGATAAGTGGTCTGAAACTTG 743383 36 100.0 30 .................................... AGTCAACTTACTATGTTAAAATAAGACAGG 743317 36 100.0 30 .................................... GACTTGAACCTGAATTAATCAAGGTAGCCA 743251 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 743185 36 100.0 30 .................................... AATTGGAACGTGTCAAACGAACAAAGGTCA 743119 36 100.0 30 .................................... TCTGGTAAAGAAATTGACGGCGCTCACTTA 743053 36 100.0 30 .................................... ATAAGTTGTATAATGTTAGTGTATTCACTG 742987 36 100.0 30 .................................... GGTACTACACCTCAAACGGTGAGTGCATGG 742921 36 100.0 30 .................................... ATATTTCGAAAGATACAAGGACACTTACAC 742855 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 742789 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 742723 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 742657 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 742591 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 57 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //