Array 1 246711-244851 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJL01000008.1 Salmonella sp. S133_54550 NODE_8_length_292092_cov_141.75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246710 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 246649 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 246588 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 246527 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 246466 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 246405 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 246344 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 246283 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 246222 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 246161 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 246100 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 246039 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 245978 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 245917 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 245856 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 245795 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 245734 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 245673 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 245612 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 245551 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 245490 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 245429 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 245368 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 245307 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 245246 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 245185 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 245124 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 245063 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 245002 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 244941 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 244880 29 96.6 0 ............T................ | A [244853] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265263-263283 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJL01000008.1 Salmonella sp. S133_54550 NODE_8_length_292092_cov_141.75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265262 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 265201 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 265140 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 265079 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 265018 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 264957 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 264896 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 264835 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 264774 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 264713 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 264652 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 264591 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 264530 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 264469 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 264408 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 264347 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 264286 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 264225 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 264164 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 264103 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 264042 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 263981 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 263920 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 263859 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 263798 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 263737 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 263676 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 263615 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 263554 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 263493 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 263432 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 263371 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 263310 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //