Array 1 102954-101003 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKL01000019.1 Leucothrix arctica strain IMCC9719 IMCC9719_contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 102953 28 100.0 32 ............................ GGACGCTGAAACTCTAAAGCCATCTTCACTAA 102893 28 100.0 32 ............................ TTCAGATATTCGTCTTGGTTAGTTGTACCGAT 102833 28 100.0 32 ............................ ACACCACGACGGTACACCACACTGGCATATTT 102773 28 100.0 32 ............................ GCATCCATCGCAGAGCGCTTGTCATCTTCTGA 102713 28 100.0 32 ............................ CATCCCCAAGTATTACTTTGCAATGTTTTTTG 102653 28 100.0 32 ............................ TAAAAGTTTGCCGTGTTTTCGCCGTACTAAAG 102593 28 100.0 32 ............................ ACTATTGCAAGGTGCAGGCGGGGCAGATGCAA 102533 28 100.0 32 ............................ TCTTCATAGATGGGTACTTAAACTCCAATGAC 102473 28 100.0 32 ............................ CCGACAAGAGGAAACCCAATAGATGAATACTA 102413 28 100.0 32 ............................ TGAAAAGAAGCGTAACTACTGGGAGCGGCAAT 102353 28 100.0 32 ............................ TAAGACACAGTTCGGTACAGGGCCGTCTTATG 102293 28 100.0 32 ............................ AGGGAAAGAAAAGCGCCAGTTGATACTTTGGT 102233 28 100.0 32 ............................ CGTTATACGAGGCTTAGCAGCGTTGCGCTTTA 102173 28 100.0 32 ............................ TCCTAGCACCTTCTGTGCTGCATCTAAAAAAG 102113 28 100.0 34 ............................ TTTATCAACGCAGTCCGTTTATCATCTTCTGAGT 102051 28 100.0 32 ............................ GTCGTAATGAATGACTGCACTCGCTGACTCAT 101991 28 100.0 32 ............................ ACTTTCACCTGAACCACATCACCAGTAATACC 101931 28 100.0 32 ............................ GCCAAAATGGGCTATCACGCTATTCAAGATGA 101871 28 100.0 32 ............................ GAAGAGCGAAAGCTTGATGTCGTATTTAAAAC 101811 28 100.0 32 ............................ TCATCAAAATTGTTGTTCGTTGTGTTTGACGT 101751 28 100.0 32 ............................ GTCGTTATTGGGAACAGCCGTTGAAGCACCCA 101691 28 100.0 32 ............................ GTCATATCAGCAACCCATTCTTTCATATCCTC 101631 28 100.0 32 ............................ GCCCATAACGGCAAGAGTAATTTCATGGTCAC 101571 28 100.0 32 ............................ ACTTACCAGCCGCGCTTGAATTCCATTTGTTT 101511 28 100.0 32 ............................ TCCCAATCTATAACAGCAAGTGCTGTCGTGGC 101451 28 100.0 32 ............................ ACGCATTAACTCAGCTGCAAAGTTCCACAACT 101391 28 100.0 32 ............................ CACAACTGATCCCTATCGCGCTTTATCGCTTC 101331 28 100.0 32 ............................ CACCTCGTCAGGACGCTCAAACGGAATGATTT 101271 28 100.0 33 ............................ CGAAGGGGGGAGTTTGGACAGGATGAAGATAGC 101210 28 100.0 32 ............................ GCGTCACCGAACATGAGCCGCACCACTGGGAT 101150 28 100.0 32 ............................ TGAGCCAGATCCAACGATCACTACTGATTGTG 101090 28 100.0 32 ............................ TTAACTTCAGCAGTTAAAAATTGATCTTTACC 101030 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 33 28 100.0 32 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : TCACGTTGGCTAGCGCGCTTAACAGACTATGTACATTGTAAAGATGTTAAGGAAGTACCTTCTGAGTTGAAGGGGTATGGTTGCTTCAAAAGGTTATTTGAAAAAGGATCAAACGAGCGTCTTGCTAGACGTAGAGCTAAAAGGCTATCAATTAGTTATGACATGGCTTTAGCATACTTCGAGAGTGATAAAGAACGTAAGCAAAGTGAAAAAGAGGTTTATCGTTTTCCTTTTATTACTATGAAGAGCTTAGGTTCAGGGGAGAAGTACCCTTTAACCATTGGTTTTTCTGAGACTAGTGATTTAACAATGAGCGAAGGCTTTAGCACTTATGGCCTAGCTTCAAAGAGTTCAGTACCTTTGTTTTGACCCTTAATTTTTGATGTAAATTAAGTTCTTTAAAAATCAGTAACTTAGCTTGAGCCAGATTTACATTGGTAAAACAGTGTTAATCTGGCTTAATTGATTGTTTTAACTGTGATTATTGTGAAATAATTGCA # Right flank : CAGAAAGACCTTTGCAGCACCTGTAATACCATGTTCACTGCCAACTCTTTTCGGCACACTTAGGCTAACCATATAAGACTCACTTTATAATGTTGCCATCGGTTATAATCTGTCCCCCTATTAAGTTACTAGCGCTGCTGCCACAAGGAAAATTATGAACACTCAAACTATCCCAGAAATCAATGCGGTTGGTTTTTCCGTACGAACGACCAATGCCAATGAGCAAGACCCATCGACCGCCAAATTAGGAAAAGTTTGGGAGAAGTTCTTCACAGTCGCGCTACCAAACCTAACGGCTCAGTCGAAGGTTTACGGGGTATACACCAACTACGAGTCAGACCACACGGGCGCGTTTGATGTGATTGCCTGTGCCAATACTTTGTCAAAAGACAGCTTAGCTGACTCGGTGGAAGTACAGATTGAAGCTGGAAAGTACCTAATATTTTCAGCACAGGGGCAAATGCCTCAGGCGGTAATCGGTCTTTGGGGTGAGGTTTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19068-18335 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKL01000006.1 Leucothrix arctica strain IMCC9719 IMCC9719_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 19067 36 100.0 34 .................................... CCAAATTTATCGGCTTCTTCCTCCGACCAACGCG 18997 36 100.0 35 .................................... AGAGTATTTGTAACCAATACCATGTTATCAACGTG 18926 36 100.0 36 .................................... GTATAGTGTTTTCACCGCTCGCGCCACAATCATTAA 18854 36 100.0 34 .................................... CGCCGCTATATTTAAACCCTGCTTCTTTAATCTC 18784 36 100.0 39 .................................... CAAAAAGTTTTCCACATAACACACGGTTTCAATTCTACC 18709 36 100.0 36 .................................... TGGTGCTTTCTTTACTGGCTCGTCTTCAACTTCAAG 18637 36 100.0 33 .................................... GTACTGAGCTAGGCACACAGGAGCGGCTAAGGC 18568 36 97.2 22 ................T................... CTGACTCTGCTGCTTCAAAACC Deletion [18511] 18510 36 100.0 34 .................................... TTCTTGGCTAGTTGCATACGCTCATTGATGATGT 18440 36 100.0 34 .................................... ACGTTATTGAATTCACGCTGATCAAACAGGTGAG 18370 36 94.4 0 ..............................A..A.. | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 99.2 34 GTGAAAACAGTGCCCTGATGAAGAAGGGATTAAGAC # Left flank : TTTCACACAGACACACAGCTAGCGTTGGACTTTAAGGAGCTTTCTGATCAGGCTAGAGCCATGACTATATTGCGCAGTGAGTTACATTGGCATGACTGGTCGCGTTACTCATCTCGTCAAAAAACGTCGGTAAAAATGGGCGGTCTAATGGGTAGCATCACGCTCGATGGCGCAAACTTGAAAGCATTTTGGTCTATTCTGTATTTAGGTCAGTTTATACACGCAGGAAAAGGCACAGGAATGGGGCTAGGGCGCTTCACTCTACATGCAGAAAACGTGGTGCCTAAAGTGAGTCTTTAAACATAAATGTGGTTGCTTGTTTAACAAGCTTTTGACGACGTGACAATGAATGATAAGTTTGGGAGAATGGTGATAAGTTGATCTGTGATTTTACTGGCTTTTGGGAGAGTAAGTGCCCAAACCTAACTTTTTTGATTTGAAAATTTTAGCCAACCCCCTCTGTAAGTGGTTGTTTAAAAAGGTCGAAAAGGTGCCTTGCA # Right flank : GTAAGTTCACTACTTAACTATTGAGTATCAAGTTAATGTAATGAACTCATTTAAAACGGGCATGTAAAAACACACCCGAACCAACGTTCAAACTTGTTTTTTTATCGAGAAAGAGAAATTTTAATCTCAACAGGAACGACGCCGCAAACACCTTTCGTTTCAAGATGGTTCCCGTCATTGATGACAACATCGTTAGGGATGTTGTTATAGGTTCTTCAGGTCGCCATTCAGTATGATTGGTTTCATGCCAAGTATCTCAGGCTTACACGACTGCTCACCCGGCTCATTCAACAAATAGAGTGGTTTACCTAGCGCATACCCAAACGCAAGCTCAATCAATGAGTTGGGGCCAACATAGCCCTCTATTCCATTTTTGGTGTAGTTAGCGATTAAGACCTTGTCCGACTTTTCAATCTTAATAAGGTGGGCACGAATATAGTCACCTTTTTGAACGGCAAAAGCTTCTTCGCCTATTTCAGCCCGTGATAAATCACGTTCTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAACAGTGCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 20835-20236 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKL01000006.1 Leucothrix arctica strain IMCC9719 IMCC9719_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 20834 36 100.0 34 .................................... TACGAAAAAGCTTTTAGATGGTAGGTTTGAGTAG 20764 36 100.0 34 .................................... TTTGCTGCGGTCACTGCTTCTCGTTTAGTCTTAT 20694 36 100.0 35 .................................... GGCTATAAAATACCCGTGGTTGCCTAGCTCTTTAG 20623 36 100.0 35 .................................... TACTCTTGCTCTGTTTGCTCTGCCTTAGGCTTAAG 20552 36 100.0 36 .................................... TGTGCTTTTTGCTTGAATGTAGCCCCTTCCTTGTAA 20480 36 100.0 33 .................................... TAAGAGATACGATTCTTGCGGCTAGTGTATATG 20411 36 100.0 35 .................................... CCATCGTTAAACTCTACTACAGCAAGTCTTAGTCG 20340 36 100.0 33 .................................... TTTAGCAACTGCCTCAATATCTCTGCCCATGTA 20271 36 88.9 0 ..............................A..ATA | ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 98.8 34 GTGAAAACGGTGCCCTGATGAAGAAGGGATTAAGAC # Left flank : TGGGAACAGCTAGATCGCTTTGGCATCATTATCGGACTGATTACTGGTGTGATAACGATGCTGATTTGGTTACATCTAAAATGGCGTGAGAAAAAAGACAACGACTTAATAGCGGTTAATTTGCTGGACTTATCGGTGGGTTACAAAGCGACGTTACCCTGCAAAATTCGTCGTAAGAACTTAACAAGGGCTGAGTTGCAGGGCTTGTTAGGTATGCTGCCGATGAATGAAAAAGGAAAACGATATGAGCTTGACGGGCTTAACCATGTAGACTTTTTTTCCTCGCTTGAAAAGGCTCAGGTGTCTAGAGATATTTATGAGGTAAATATTTTATGTACTAACGATGATTTGATGCAGTTTGATAAAGCGAGACTGGAGACCTTTTGTGAGATTAGCGAAATCTAAAGGAGGAGGGATGAAACCTAACTTTTTGGAATTGAAAATTTTAACCAGCCCCCTCTGCAAGTGGTTGATTAAAAAGGTCGAAAAGAGGCCTTGCA # Right flank : TGAAAGAAAACGAAATACAACTGCCAATGGCTCAGTACCGCCTCAAAGCGATAGCCAAGGAAGATATTCAACTACCCGCCTACACAGGTTCAGCGTGGCGTGGGCTGTTTGGTCACGCCTTGAGGTCAGCCGTATGTGTCACGGGGAAGCCTGAGTGCAAAGGTTGTTTGCTGTATCAAAACTGTGTGTATAGCTACGTCTTTGAAACACCGCCACCAGCGGGTACTCAAGTCATGCGTAAATACACCGCAGCGCCACACCCCTTTGTATTGATTCCTAACGCCAATCAGTCCACTGAGGTCAAGCAAGGTGACGAACTGCTGCTCGATTTCACGTTGTTTGGAAAAGCCAATCAGCACTTGCCATACATTCTCTACGCTTTAGAAAAGGCAGGAGAAAGAGGCTTGGGTACTAAGCAAGGGCAGTTCTCTGTGACTTCCTTGTGGCAGCAGCAAGATGATTGGCAATGCATTTATGAAGCGGGAGGAAGTTTGCAAGCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAACGGTGCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 33036-32092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKL01000006.1 Leucothrix arctica strain IMCC9719 IMCC9719_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 33035 36 100.0 32 .................................... CGTATATACGGTGGTTTACAGCTTATTTTACT 32967 36 100.0 32 .................................... CGTATATACGGTGGTTTACAGCTTATTTTACT 32899 36 100.0 32 .................................... CGTTTGAGAAATCCATGTACACCCAATTGTTT 32831 36 100.0 37 .................................... CTTCGGTCATTACTTCGGTATCACTCAAACCATTTGG 32758 36 100.0 34 .................................... AGGTGATGCACGTCCAACACCTTTAGCGCCTTAG 32688 36 100.0 34 .................................... CGCCCAGTCCTGACCAGTCTTACCTAGCTCTGCG 32618 36 100.0 37 .................................... TCATTGATATATTCGATAGGCATATCCAAACTATTCA 32545 36 100.0 33 .................................... TGTGTGTTTCTGGTAAGTTGTCTAGTGTTTGAG 32476 36 100.0 32 .................................... ATAATTACCATCACAGCAGTCGCTAAAGATAG 32408 36 100.0 34 .................................... GCAGAGAACCAGTTAAGACAACCATGCTCTGCAC 32338 36 100.0 34 .................................... TAATAATCACTGCTAACATAATTGCTGATATAAT 32268 36 100.0 34 .................................... CGAATACCCGCCATCGCTACGAAACCCTGAATAT 32198 36 100.0 34 .................................... GCATATTCCACCATCGCTATGCGTGAGAATGTAT 32128 36 97.2 0 .................................C.. | T [32097] ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.8 34 GTGAAAACGATGCCCTGATGAAGAAGGGATTAAGAC # Left flank : CTATATAGAATAAGTCGGTGTCATTGGGAGACTTCGCTTTACCGAGGGTGATGACTTGTTGGCGCGTGTCTAGGTGAATGCAAATGAGGCTGTCTGTTGATTCGTCAATTAGCATGCTGAGAGTGGCCAGTAGGTCGCCTCGCTCTGCATCGGTCATCCAGCACTCGTGAACGGACTGTTGCCCGCCTGTTGCATAGTCCCGAGTCGCTTTGAGGGCTGCTCTTAGGCATTTAGGTTTGCTGATGTCGTAAGCGATGAGGTGTAGAGTTCGATTTTTCATGCGATGATTTAAACCGAAAATAAACCGTATTACTCGGCTTACAAGCTTGTGGGGAGGTGACAGGTGGCGTTTGTTTCAGCACAATGTATAATGAGTTAATTCGCTGTTATGCATGAGGTTGAAGTGATGAAAATGCTAAAACCTAACTTTTTGAAATTGAAAACTTTAGCCAACCCCCTCTGCAAGTGGTTGATTAAAAAGGTCGAAAAGGTGCCCTGCA # Right flank : CAGTGCTAGATTGAATGTCGGTGGTAGATAAACGCTTAGTATGTTTATAATCTCAACATGACTGACCACAAGCCACGGAATCACCCACTGCCAGAGCGCCGCATTTTACTTGCGGTAGCCTCTCATTCGCCACAAATTATCACCGAGACGATTTACGCGCTAACGCAGCAGACTGAGCCTGCGTTTATGCCGACGGAGATTCACGTCATCACGACCTTGCTTGGTCAGTCGTACATTCATCAAGTCTTTGGTGAAGAAGGCAAACAAGGTTGGTTGCACCGTTTATGTGACGACTACTCGCTACCTTGCCCAGCCCAAAGTAAGTTACATATTCACGTTATATCTGATGCGGACGGACAGCCTTTGGATGATGTTCGCACTCGGGCGGATAACACCGATGCCGCTGACTTTATAACTCAAACAGTCCAGCAGTTAACCGCAGACCTAGATAGCAAAATGGTTGTGTCACTGTCTGGTGGGCGACGCACCATGACGTTTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAACGATGCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 36136-35542 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKL01000006.1 Leucothrix arctica strain IMCC9719 IMCC9719_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 36135 36 100.0 35 .................................... CCTTCATCAATCATCGATTCACATAGATGCCAACT 36064 36 100.0 33 .................................... GGGTTTCTGTTAGTCAGTAGGTGTATCTTCTTC 35995 36 100.0 36 .................................... CTTGTTACTCTTTGGCACTGCCTTGTCTGCTGCTTT 35923 36 100.0 31 .................................... GGACGTTCATTTTGGTGTTGCTGAGGAAATC 35856 36 100.0 34 .................................... AACTAAGTCTGGGTAAATTTTAGCAGGGTTGGCA 35786 36 100.0 33 .................................... CCAACGAGATAATCAGCCACCGCCTCTGACTTA 35717 36 100.0 34 .................................... GCCAATTTGAATTGCGGATTAGATTCTGAATTCA 35647 36 97.2 34 .......C............................ TGATCAACGACCTTGTATAAGCTAATGTCGTTGT 35577 36 83.3 0 .......CC.........C...........A..A.A | ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 97.8 34 GTGAAAATGATGCCCTGATGAAGAAGGGATTAAGAC # Left flank : CTCAAAACCTGAATATGTAAACCCTGAGCTTTACTACTGGCACCCGCCAAGGTCTGAGGCACAAGCGGAAGTCGACTTTTTGTATGTTGCAGGTAACACCATTATTCCTGTCGAAGTGAAGGCGGGCAGCACGGGAACGATAAAGTCATTGCAGTCTTACGTGATAAAAAAACAGGCTGATGTAGCGGTAAGAGTGAGTTCAGGCAAACCATCGGTTAATGAGTTGGTAGCTAAAAGTAATAATAAAACGCGCGACTTTAAGCTAGTGAACTTACCGTTTTACTTGGTTAATCGCTTGGGCGCGTTGATTGCTTAGCCTTACAAGCTTGCGAATGCGTGACAAATGGCGTTTGTTTCAGCACAATGTATAATGAGTTAATTCGCTGTTATGCATAAGGTTGGAGTGATGAAAATGCTAAAACCTAACTTTTTGAAATTGAAAATTTTAGCCAATCCCCTCTGCAAGTGGTTGATTAAAAAGGTCGAAAAGGTGCCCTGCA # Right flank : TTAGGATTTACTACTCAAGACCCCAACCAATCCATCTGGCCACAAGGTATTTCCCCACGCGTACCATTGCGGCTTCTGCGGCAGCGGATAAAACCGAATATCATCTTCTTTAGGGTTTATAACTGCTTCCAACTCATCCACTAAGCCTAGACAGTCAGCGCGATTCATCACGGTAATAAACACCGACTTTTGCATCGCGATGGCGTTATTTTTGAGTATGCGGTGCACTCGTTTTAAACGACGTGGGTCAGCAATATCGTAAGCGATTAAATACGGTGTAACTTTAGTTTTGCTCATGTTCTACCTCATAAAAACGGTGCCACAACTGGTCAATGGAGAAACGAGTTAAGCGCTCGACCTTTGACGAGTGGGATTGATAATAGTGAATCAGTTGGTTGCGCAGTGTTCCCGAAGGCAAGTTGCCGTTTGCCGCTGCCTGCCAGAGTTCCCACTCTAAAAGGTTGATAAAGCGTTGTAGCAAGCCAATGTCAGAAGGCGCG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATGATGCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 38772-37787 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGKL01000006.1 Leucothrix arctica strain IMCC9719 IMCC9719_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 38771 36 100.0 34 .................................... GCTTCGGCTTGCATCGCTTCGGCTTTCGCTAGAA 38701 36 100.0 33 .................................... TTTGTATTACTTCCTATATTGTTTAAGTATATA 38632 36 100.0 34 .................................... CTTTGTCAGTCATCCAAACTGTTCCTTTTTTTGG 38562 36 100.0 32 .................................... GTAAGTTTTCCGCTGCCAGATTTAAAACATCA 38494 36 100.0 34 .................................... GTTTAATTTTCCATTGTTAAAGAATACTAACTCC 38424 36 100.0 36 .................................... TGTGCGTCAAAAAATGACTGCGACTTACTTACAAAA 38352 36 100.0 32 .................................... CTTTCGATTCAAGGTAGTTGATAATAGCTTGG 38284 36 100.0 9 .................................... ATTTCCTTG Deletion [38240] 38236 31 77.8 34 -----..T....G.T..................... TTAGCCTTTGGATCTAGTGCGACCTGCTCTACCT 38171 36 100.0 34 .................................... ATCGATAGTCAACATAGTTTGGCTTGATGGTGCT 38101 36 100.0 33 .................................... CGTTCCGTGTTGACTGCTACGGCATTAATCCAA 38032 36 100.0 33 .................................... CGTTCCGTGTTGACTGCTACGGCATTAATCCAA 37963 36 97.2 36 ..........C......................... GTAAAGGCTTGAGGCAGAAGGTCATACTCGATATTC 37891 36 97.2 34 ..........C......................... GAAGCTCGTACAGGAGGCGTAGACGAGCGTGAGA 37821 35 97.2 0 .................................-.. | ========== ====== ====== ====== ==================================== ==================================== ================== 15 36 98.0 32 GTGAAAACGATGCCCTGATGAAGAAGGGATTAAGAC # Left flank : CGACTTAAAAAAATCAACGGTCCACTGCAAGACAAAGAGTGCACGGTTGAGGTGAAATTAGCTAGGCAGCCGCCTATTGTTGTAAGTAAACGTAGTACTGACGCTTATGCGAGTATTCGCAGTGCCATGTCACGTGCTTCTCGTACTACCTTGCGTCGAGTGAAACGTCGTAGAGCTAAGAGGGCTGAAGTGTCTGAATAGGTCTTTGTGACTGTGTAAGTACAAATTTAGATTGATAAAGAACCCAGCGCTTGCTGGGTTTTTTTGTGTGTGCTGCTGGCGTAGTTAAATGTACCTAAGAAGCAAGCTGACTTAGCCTTACAAGCTTGTGAATACGTGACAAGTGGCGTTTGTTTCAGCACAATGTATAATGAGTTAATTAGCTGTTGTGTATAAGGTTGAAGTGATGAAAATGCTAAAACCTAACTTTTTGGAATTGAAAATTTTAGCCAACCCCCTCTGCAAGTGGTTGATTAAAAAGGTCGAAAAGGTGCCCTGCA # Right flank : ACCTCGTTTTTAAATCAACCACTTTAATTCAAATAATATAAAAAAGTGTTACACTTTAATTCAGCTTAAGAGTTATGGTGGTTTATGTTCATTCGTGAAGCAGTCTCAGATATCACTCATTGGTATAAGCAAACACAGCGCAAACCTTTAGTCATACGGGGTGCGCGGCAGGTTGGCAAAACCACCAGTGTGCGCATGGCTGCCGAGCAGTTAAATGTCCCGATGATAGAGATCAACTTGGAGCGTCATACAGACCTTGCACCATTGTTTGATGGTTTCCGATTAGATGACTTGTTGTTTAACTTCTCACTACTGTCAGGGCAGGCGCTGAGTAAAGACAGCCCTGCGATACTGTTTTTAGATGAAGCTCAGGCTATTCCATCGGCCTATGCCTGCTTACGTTATTTTTACGAAGATATGCCAAATATGGCCGTCATCTTAACTGGCTCACTGCTTGACCAAGTGCTGAATAATTACAAACTCCCCAGCCCTGTTGGACG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAACGATGCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //