Array 1 716635-715566 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEHNS010000039.1 Ligilactobacillus salivarius strain A19 NODE_64_length_738375_cov_19.581989, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
    716634	    29	 100.0	    32	.............................	AACATCAATTGAGAGTGTGCTATTTGATGATA  	
    716573	    29	 100.0	    32	.............................	AACCAGTTAATACCGTCAATACCAGAGTTTAC  	
    716512	    29	 100.0	    32	.............................	ACGACTTGAATACGTTACTCAGCAAGCCACAG  	
    716451	    29	 100.0	    32	.............................	AAATCTAAACCCGTCGATTTCGACGGGTTTTA  	
    716390	    29	 100.0	    34	.............................	GTTTAGAGCGTTTATAGCTGCTTGAATTGTCCAA	
    716327	    29	 100.0	    32	.............................	ATAACTAATAACTTTATAAAACAAAAAAATAA  	
    716266	    29	 100.0	    32	.............................	GATCGTGATTTCCTAGTACCCAAAAAATAGGT  	
    716205	    29	 100.0	    32	.............................	GGAATAGTAAAAGTAACCCAATTTGATCCTTT  	
    716144	    29	 100.0	    32	.............................	ATCCAAGGTGATTTACAAATTGCTGACGGAGC  	
    716083	    29	 100.0	    32	.............................	AAGCCATCTTGCTTAATCTTATCATCCAACGC  	
    716022	    29	 100.0	    32	.............................	GAAAATAGGAGATGTAGAATATATCAAAGTGA  	
    715961	    29	 100.0	    32	.............................	AAACGAGCAAATGGCGAAGATGTTTCCTAACG  	
    715900	    29	 100.0	    32	.............................	ACTATTAGACAACTCAATAACAATTTCGAAGA  	
    715839	    29	 100.0	    32	.............................	ATCGTTGTCGGTCTTCCATCTGAAGACAAACT  	
    715778	    29	  96.6	    32	............................C	ATTCCCTTGTTTAAATTCACTAATTAATCTAT  	
    715717	    29	 100.0	    32	.............................	AGATAAAGACGTAATTGTTGGTGTAACAATGG  	
    715656	    29	  96.6	    32	............................C	AATTCTATTAAACAAAATAGGAGTTGGATTAA  	G [715633]
    715594	    29	  82.8	     0	..............AA...A......TA.	|                                 	
==========	======	======	======	=============================	==================================	==================
        18	    29	  98.7	    32	GTGTTCCCCATGTATGTGGGGGTGATCCT	                                  	       

# Left flank :   TTAGAGAAAGATAGTATTATATCAATAGGTGTCGTTAAAGTAGAAAATAATAGCAAGCATGACTATTATTCCCTTATTAAAGGTATAGAAGAAATTCCGGGTGAAATCAGTGAGTTAACTGGTATAGGAATTGATGATTTGAATAAAGATGGTGAAGATATATATAAAGTTTTAAAAGTATTGTATAGAATTTTAGATGATGCTATTATTATTGGGTATAATCTTAATTTTGATCTTAATTTTCTTAATAGAGAATATGAGCAATATACTGAACTTAAGTTGATAAATAAGGTGATTGATTTACTCCCAATAGTAAAAAAACAGTGTCGTTTTTTAGATAATTATCGCTTAGAAACGGTATTGCAATATTTTGGTATAGAAAATTCTCATCCACATAATGCATTGGAAGATGCTAGGGCTTGTATTGAATTGTATGAGAAACTAATAAAAAACAAATAGTAGTAACTTCAAAAAGACTGATTTAATAGGGATATTTTACT
# Right flank :  TTAGAAAAATTAAAGAAGTAGGGGCTTAAGTCATATTTCTAAAGACTTTATAATATAGGTTATAATGTCCTCTGAGTATACAAATGAAATAGAAAATACGTCTGGCGAAGAAAATCTAAATATTCAGCTGAATAAGAACTATCATTACTTAATGAAATTTCATATATCGGAATCTTTGAAGTAACAATTAAGTATAAGATCGATTATAAAACTATTAGACGATGGAGACTGCTTTATCAGTATCAAGATCTTCAACCAAGTAATAGAAATCAGAATTATTCTAAGGAATTCAAGTATTTATTAATTGAGCAATACAAATATTTAAACGAACCCGCGAAATTATTTGCAATAAAAAAAGATCTACGTTCAGTGATTCAGTTGGAAAGCTTTTTCCATCTTTTTAAAGTTGAATNNNNNNNNNNNNNNNNNNNNACAGCCTGAAATAAAGAAATGTAAGAGTATTTCTCAGTTCACACAGTTCTTTAACAAGTATGTCAATT

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCATGTATGTGGGGGTGATCCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [10,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.40,-9.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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