Array 1 139317-141068 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAWF01000023.1 Streptococcus agalactiae strain BSE006 188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 139317 36 100.0 30 .................................... TTAACCCCTAATTATGACTAACCTTTAGGT 139383 36 100.0 30 .................................... AAAGGTAAGATTCAAAATTTAGAGTCATTA 139449 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 139515 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 139581 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 139647 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 139713 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 139779 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 139845 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 139911 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 139977 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 140043 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 140109 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 140175 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 140241 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 140307 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 140373 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 140439 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 140505 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 140571 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 140637 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 140703 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 140770 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 140836 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 140901 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 140967 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 141033 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //