Array 1 38483-36300 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFJ01000083.1 Acinetobacter baumannii UH6907 ctgN68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38482 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 38422 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 38362 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 38302 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 38242 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 38182 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 38122 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 38062 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 38002 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 37942 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 37882 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 37822 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 37762 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 37702 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 37642 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 37582 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 37522 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 37462 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 37402 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 37342 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 37282 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 37222 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 37162 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 37102 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 37042 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 36982 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 36922 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 36862 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 36802 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 36742 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 36682 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 36622 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 36562 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 36502 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 36447 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 36387 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 36326 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43573-48103 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFJ01000083.1 Acinetobacter baumannii UH6907 ctgN68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43573 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 43633 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 43693 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 43753 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 43813 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 43873 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 43933 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 43993 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 44053 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 44113 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 44173 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 44233 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 44293 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 44353 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 44413 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 44473 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 44533 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 44595 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 44655 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 44715 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 44775 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 44835 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 44895 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 44955 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 45015 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 45075 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 45135 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 45195 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 45255 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 45315 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 45375 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 45435 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 45495 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 45555 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 45615 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 45675 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 45735 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 45795 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 45855 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 45915 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 45975 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 46035 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 46095 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 46155 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 46215 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 46275 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 46335 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 46395 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 46455 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 46515 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 46575 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 46635 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 46695 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 46755 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 46815 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 46875 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 46935 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 46995 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 47055 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 47115 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 47175 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 47235 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 47295 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 47355 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 47415 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 47475 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 47535 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 47595 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 47655 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 47715 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 47775 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 47835 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 47895 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 47955 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 48015 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 48075 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 76 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //