Array 1 228775-228555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBF010000002.1 Clostridium botulinum strain KM57-1-TJ980B 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 228774 29 100.0 34 ............................. CTAAATAGTCTGGAACAACAATATAATGAATTAA 228711 29 100.0 35 ............................. TTCCTTATTGATTCAAAGATGCTTCTTTGTTTCTG 228647 29 96.6 35 ....G........................ CAAACAAAAACATTTAAGGAATGTTTTCTAACAAA 228583 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 98.3 35 ATTTAAATACATCTCATGTTAATGTTCAA # Left flank : AGTTTCTATTTTATCTATAAATTCTTTACTTAATCCCCTAATATTAAAAATATACAACCTATCTTTTTTATAAAATTTATCTCTTTCTATAGGATAAAAACTATTAAACACATAATTTTTATACTGTTTCTTTGGATGTATTTTTTTTAAATCGTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATGTCTTTTTTTAACATTACTGTTGCAATCAGTTCCCAAAATTCCATTTATACACCTCTTTATACAAATTTATCTATATTATACCATACACCCTTTAGTTAATATAACTGATTATTCTACTTATATTTTAAAAATATTATTATTTTTATTAATAATAAGTTAATTACTCATCATATTCCATTCTAAAACTTCGCATAAAATAAAAGCCTTAGATTATTCTAAGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAATAC # Right flank : CCATAGTAAAATAGCCATTCCTTATTTTTAAGAATATCATACAACCATTAATTTCACAAGATTTTAAAGAAAGTTTTCCAAGTAGTTTTGCTTTTTTACAAATATAAAATAAAAACCTACCATAAGCCTTATATGTCAACGCTCAAAATAGGTTTTAAAATTTATTTTGGCTGGAAAAATTCAGTTAGTAGAACTCCTTCTCGCTTCCTCAAATGAGTAAGTACCTCACACTAAATCTCAGATTTATATTTACTACTTAAATACATCTAACTTTACAATATAATTGGATTGCCCAATAAAAAATCGCAAATTCAATCTCTTGAATAATGCGATTTTTTACGTTTATTATTATAGTAAAATAGTTCCCTTTGCCAAAATAGCTACCTCTCCAGACACTAGTATTTCTTTTTCAGAAATGCTCATAGAAACCTTAATTTTACTAGGTCTGCCGACAAATCTTCCTTGATTTATTATAATCTCATGACCTACATTAAAAATAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 752327-752961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBF010000001.1 Clostridium botulinum strain KM57-1-TJ980B 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 752327 28 96.4 37 ..............T............. ATTGGTTGTAAATACCTAATTTATTCCCAGAAGATAC 752392 28 100.0 38 ............................ GCATTAAATAAAACTATAAAAGAAGCAACAAAAATAAA 752458 28 100.0 37 ............................ GCTTTGATGAAAAGCAACTATACAAATGTAAACATAC 752523 28 100.0 40 ............................ GCGTATTTAATTAAATTAATTACCTATAAATGGATAATTC 752591 28 96.4 39 ..............T............. ACGTCTCTCCCAACAAAAGCACATAGCTTTAGTTAAGTC 752658 28 96.4 36 .....................G...... ATAGAATATTTAATATCCGAATATAAAGAAAACAAA 752722 28 85.7 118 ............A.T..A.....A.... GTAGTTTTCATACCATACATAAGCTTAAAACATTAAATATCTAATTATTTAATGAAACTCCTTCTCGTTCCCTCGAACGAGTAAGCGACTCACACCAAATCACAGATTTGGGTTCCCT 752868 28 89.3 38 GC.................C........ ACGTGAAAAATAATGTTGGATAATACAGCGAAAATAAG 752934 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 9 28 96.0 48 ATTTAAATACATCTCATGTTAATGTTCA # Left flank : CTGAAATAGAAGAACATCAAAAGAAATATTCAGAGGAAGTAAAAAATAAATATGAAAACACCTCTGCTTATAAGGAAAGTAATGAAAAAACTTCTAAATATACAAAAGAAGATTGGAATAATATAATGAAAGATTGGGATATTATTTATAAAAAACTAGCAAATCTTATGGACAAAAATCCAGATGATGAGGAAGTTCAAGAATATATTCACCAATTTAGGGAGCATATTTCAAAAAACTTTTATGATTGTACCCCTGAAATATTTAGGGGTCTTGGGGAACTTTATGTTAATGATGAAAGATTTACGAATAATATAGATAAATATACAGTTGGTCTTTCTAAATTTTTAAGGGAAGCTATTAATGTTTATTGTGACAATATAAAATAATAATTATATGCTATTTTAAATATTATCTAAAATAGCTAGTATTTATTACACAAAAATAAGGTGATTCAAAATAGATTTAATTTATTTTGAATCACCTTATTCTACATGCTG # Right flank : AATCATAGTAAAATAGCCATTTCTCAATTCTAAGAATAGCATATAGCCTTTAATTTTACAAGGTTTCAAAGAAATTTTTCCAACCGTTTGTCATTTTTTATAAAGACATAGATAAAGCTTATCTTAAGGCTTATATTTCAATACCTAGAATAGAATTTAAAATTAAATGTGGTTGGAAAATTCTTTTACTTATAATTAGATTAATTAGTTACTAAAATTAATTTTATTTTATTTTTAAAGGTATTCCACAGGTTACTAAATAAACCTCATCACTCAAAGAAGCTATAAATTTATTTATAATACCTTGAAAGTCTCTAAATATCCTACCTAATTTATAGGCTGGAACAATGCTATAACCTACTTCATTAGTAACTAATATTATGTTTTTATTTTCTTCTTTTACTGATATTATTAGATCATAAAACTCTTTTTTTATCCCCTCTAAAATTTCATCTAATTGTTCTTCTTTAATATTTTCATAATCTATTTTTTTATGAAAC # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.99, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCA # Alternate repeat : ATTTAAATACATCTTATGTTAATGTTCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //